2de6 - Revision history

OCA at 08:25, 25 October 2023

OCA — Wed, 25 Oct 2023 08:25:55 GMT

←Older revision		Revision as of 08:25, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2de6' size='340' side='right'caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2de6' size='340' side='right'caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_14235 Atcc 14235~~] and [https://en.wikipedia.org/wiki/~~Janthinobacterium Janthinobacterium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [https://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>~~, ~~<scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2de5\|2de5]]~~, ~~[[2de7\|2de7]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [https://pdbe.org/2de6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [https://www.ebi.ac.uk/pdbsum/2de6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2de6 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [https://pdbe.org/2de6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [https://www.ebi.ac.uk/pdbsum/2de6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2de6 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q84II6_JANS3 Q84II6_JANS3]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 14235]]
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Ashikawa, Y~~]]	+	[[Category: Pseudomonas resinovorans]]
-	[[Category: ~~Nojiri, H~~]]	+	[[Category: Ashikawa Y]]
-	[[Category: ~~9a-dioxygenase]]~~	+	[[Category: Nojiri H]]
-	~~[[Category: Carbazole 1]]~~	+
-	~~[[Category: Electron transfer complex]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Rieske non-heme iron oxygenase system]]~~	+
-	~~[[Category: Rieske-type ferredoxin]]~~	+
-	~~[[Category: Terminal oxygenase~~]]	+

OCA at 10:30, 8 December 2021

OCA — Wed, 08 Dec 2021 10:30:29 GMT

←Older revision		Revision as of 10:30, 8 December 2021
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	<StructureSection load='2de6' size='340' side='right'caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2de6' size='340' side='right'caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [~~http~~://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [https://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2de5\|2de5]], [[2de7\|2de7]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [~~http~~://pdbe.org/2de6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2de6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2de6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [https://pdbe.org/2de6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [https://www.ebi.ac.uk/pdbsum/2de6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2de6 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:35, 4 March 2020

OCA — Wed, 04 Mar 2020 07:35:55 GMT

←Older revision		Revision as of 07:35, 4 March 2020
Line 1:		Line 1:

	==The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==		==The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==
-	<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2de6' size='340' side='right'caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	[[Category: Atcc 14235]]		[[Category: Atcc 14235]]
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
		+	[[Category: Large Structures]]
	[[Category: Ashikawa, Y]]		[[Category: Ashikawa, Y]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]

OCA at 06:15, 30 May 2018

OCA — Wed, 30 May 2018 06:15:29 GMT

←Older revision		Revision as of 06:15, 30 May 2018
Line 1:		Line 1:
		+
	==The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==		==The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==
	<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://pdbe.org/2de6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://pdbe.org/2de6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2de6 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2de6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2de6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:00, 8 February 2016

OCA — Mon, 08 Feb 2016 18:00:45 GMT

←Older revision		Revision as of 18:00, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2de6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:03, 10 September 2015

OCA — Thu, 10 Sep 2015 14:03:33 GMT

←Older revision		Revision as of 14:03, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Janthinobacterium Janthinobacterium~~] and [http://en.wikipedia.org/wiki/~~Pseudomonas_resinovorans Pseudomonas resinovorans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14235 Atcc 14235] and [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://pdbe.org/2de6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2de6" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 14235]]
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
-	[[Category: Pseudomonas resinovorans]]
	[[Category: Ashikawa, Y]]		[[Category: Ashikawa, Y]]
	[[Category: Nojiri, H]]		[[Category: Nojiri, H]]

OCA at 17:34, 15 January 2015

OCA — Thu, 15 Jan 2015 17:34:31 GMT

←Older revision		Revision as of 17:34, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
	[[Category: Pseudomonas resinovorans]]		[[Category: Pseudomonas resinovorans]]
-	[[Category: Ashikawa, Y.]]	+	[[Category: Ashikawa, Y]]
-	[[Category: Nojiri, H.]]	+	[[Category: Nojiri, H]]
	[[Category: 9a-dioxygenase]]		[[Category: 9a-dioxygenase]]
	[[Category: Carbazole 1]]		[[Category: Carbazole 1]]

OCA at 00:47, 30 September 2014

OCA — Tue, 30 Sep 2014 00:47:32 GMT

←Older revision		Revision as of 00:47, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2de6.~~png~~\|~~left~~\|200px]]	+	==The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase==
		+	<StructureSection load='2de6' size='340' side='right' caption='[[2de6]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DE6 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2de5\|2de5]], [[2de7\|2de7]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2de6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2de6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2de6 RCSB], [http://www.ebi.ac.uk/pdbsum/2de6 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/2de6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carbazole 1,9a-dioxygenase (CARDO), a member of the Rieske nonheme iron oxygenase system (ROS), consists of a terminal oxygenase (CARDO-O) and electron transfer components (ferredoxin [CARDO-F] and ferredoxin reductase [CARDO-R]). We determined the crystal structures of the nonreduced, reduced, and substrate-bound binary complexes of CARDO-O with its electron donor, CARDO-F, at 1.9, 1.8, and 2.0 A resolutions, respectively. These structures provide the first structure-based interpretation of intercomponent electron transfer between two Rieske [2Fe-2S] clusters of ferredoxin and oxygenase in ROS. Three molecules of CARDO-F bind to the subunit boundary of one CARDO-O trimeric molecule, and specific binding created by electrostatic and hydrophobic interactions with conformational changes suitably aligns the two Rieske clusters for electron transfer. Additionally, conformational changes upon binding carbazole resulted in the closure of a lid over the substrate-binding pocket, thereby seemingly trapping carbazole at the substrate-binding site.

-	~~{{STRUCTURE_2de6\| PDB=2de6 \| SCENE= }}~~	+	Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase system.,Ashikawa Y, Fujimoto Z, Noguchi H, Habe H, Omori T, Yamane H, Nojiri H Structure. 2006 Dec;14(12):1779-89. PMID:17161368<ref>PMID:17161368</ref>

-	~~===The reduced complex between oxygenase and ferredoxin in carbazole 1~~,~~9a-dioxygenase===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_17161368}}~~	+	==See Also==
-		+	*[[Dioxygenase\|Dioxygenase]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~2de6~~]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:017161368<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
	[[Category: Pseudomonas resinovorans]]		[[Category: Pseudomonas resinovorans]]

OCA: Protected "2de6" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 10:07:35 GMT

Protected "2de6" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:07, 6 January 2013

OCA at 10:07, 6 January 2013

OCA — Sun, 06 Jan 2013 10:07:33 GMT

←Older revision		Revision as of 10:07, 6 January 2013
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	[[Image:2de6.png\|left\|200px]]		[[Image:2de6.png\|left\|200px]]

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	{{STRUCTURE_2de6\| PDB=2de6 \| SCENE= }}		{{STRUCTURE_2de6\| PDB=2de6 \| SCENE= }}

	===The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase===		===The reduced complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase===

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	{{ABSTRACT_PUBMED_17161368}}		{{ABSTRACT_PUBMED_17161368}}

	==About this Structure==		==About this Structure==
-	~~2DE6~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA].	+	[[2de6]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Janthinobacterium Janthinobacterium] and [http://en.wikipedia.org/wiki/Pseudomonas_resinovorans Pseudomonas resinovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DE6 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17161368~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017161368</ref><references group="xtra"/>
	[[Category: Janthinobacterium]]		[[Category: Janthinobacterium]]
	[[Category: Pseudomonas resinovorans]]		[[Category: Pseudomonas resinovorans]]
	[[Category: Ashikawa, Y.]]		[[Category: Ashikawa, Y.]]
	[[Category: Nojiri, H.]]		[[Category: Nojiri, H.]]
-	[[Category: ~~Carbazole 1,~~9a-dioxygenase]]	+	[[Category: 9a-dioxygenase]]
		+	[[Category: Carbazole 1]]
	[[Category: Electron transfer complex]]		[[Category: Electron transfer complex]]
		+	[[Category: Oxidoreductase]]
	[[Category: Rieske non-heme iron oxygenase system]]		[[Category: Rieske non-heme iron oxygenase system]]
	[[Category: Rieske-type ferredoxin]]		[[Category: Rieske-type ferredoxin]]
	[[Category: Terminal oxygenase]]		[[Category: Terminal oxygenase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 00:58:29 2009''