2dvm - Revision history

OCA at 08:30, 25 October 2023

OCA — Wed, 25 Oct 2023 08:30:52 GMT

←Older revision		Revision as of 08:30, 25 October 2023
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	<StructureSection load='2dvm' size='340' side='right'caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2dvm' size='340' side='right'caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~'pyrococcus_shinkaii' 'pyrococcus shinkaii'~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MES:2~~-~~(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>~~, ~~<scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks'>[https~~:~~//en.wikipedia.org/wiki/Malate_dehydrogenase_~~(~~oxaloacetate~~-~~decarboxylating~~) ~~Malate dehydrogenase (oxaloacetate~~-~~decarboxylating)]~~, ~~with EC number [https~~:~~//www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [https://pdbe.org/2dvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [https://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [https://pdbe.org/2dvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [https://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O59029_PYRHO O59029_PYRHO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus shinkaii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Kunishima, N~~]]	+	[[Category: Pyrococcus horikoshii]]
-	[[Category: ~~Lokanath,~~ N K]]	+	[[Category: Kunishima N]]
-	[[Category: ~~Mizutani, H~~]]	+	[[Category: Lokanath NK]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Mizutani H]]
-	~~[[Category: Malic enzyme]]~~	+
-	~~[[Category: Nad]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 17:17, 15 December 2021

OCA — Wed, 15 Dec 2021 17:17:14 GMT

←Older revision		Revision as of 17:17, 15 December 2021
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	<StructureSection load='2dvm' size='340' side='right'caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2dvm' size='340' side='right'caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [~~http~~://pdbe.org/2dvm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvm ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [https://pdbe.org/2dvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [https://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvm ProSAT], [https://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:21, 11 March 2020

OCA — Wed, 11 Mar 2020 08:21:45 GMT

←Older revision		Revision as of 08:21, 11 March 2020
Line 1:		Line 1:

	==NAD complex structure of PH1275 protein from Pyrococcus horikoshii==		==NAD complex structure of PH1275 protein from Pyrococcus horikoshii==
-	<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='2dvm' size='340' side='right'caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus shinkaii]]		[[Category: Pyrococcus shinkaii]]
		+	[[Category: Large Structures]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]
	[[Category: Lokanath, N K]]		[[Category: Lokanath, N K]]

OCA at 06:45, 6 June 2018

OCA — Wed, 06 Jun 2018 06:45:16 GMT

←Older revision		Revision as of 06:45, 6 June 2018
Line 1:		Line 1:
		+
	==NAD complex structure of PH1275 protein from Pyrococcus horikoshii==		==NAD complex structure of PH1275 protein from Pyrococcus horikoshii==
	<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://pdbe.org/2dvm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://pdbe.org/2dvm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dvm ProSAT], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dvm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dvm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 10:43, 7 February 2016

OCA — Sun, 07 Feb 2016 10:43:18 GMT

←Older revision		Revision as of 10:43, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dvm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 00:45, 10 September 2015

OCA — Thu, 10 Sep 2015 00:45:38 GMT

←Older revision		Revision as of 00:45, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_horikoshii Pyrococcus horikoshii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://pdbe.org/2dvm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pyrococcus ~~horikoshii~~]]	+	[[Category: Pyrococcus shinkaii]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]
	[[Category: Lokanath, N K]]		[[Category: Lokanath, N K]]

OCA at 16:27, 15 January 2015

OCA — Thu, 15 Jan 2015 16:27:30 GMT

←Older revision		Revision as of 16:27, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
-	[[Category: Kunishima, N.]]	+	[[Category: Kunishima, N]]
-	[[Category: Lokanath, N K.]]	+	[[Category: Lokanath, N K]]
-	[[Category: Mizutani, H.]]	+	[[Category: Mizutani, H]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
	[[Category: Malic enzyme]]		[[Category: Malic enzyme]]
	[[Category: Nad]]		[[Category: Nad]]
Line 29:		Line 29:
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 00:02, 30 September 2014

OCA — Tue, 30 Sep 2014 00:02:10 GMT

←Older revision		Revision as of 00:02, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2dvm.png\|left\|200px]]~~	+	==NAD complex structure of PH1275 protein from Pyrococcus horikoshii==
-		+	<StructureSection load='2dvm' size='340' side='right' caption='[[2dvm]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_2dvm\| PDB=2dvm \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DVM FirstGlance]. <br>
-	===NAD complex structure of PH1275 protein from Pyrococcus horikoshii===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene><br>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase_(oxaloacetate-decarboxylating) Malate dehydrogenase (oxaloacetate-decarboxylating)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.38 1.1.1.38] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dvm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dvm RCSB], [http://www.ebi.ac.uk/pdbsum/2dvm PDBsum], [http://www.topsan.org/Proteins/RSGI/2dvm TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dv/2dvm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]

OCA: Protected "2dvm" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 09:29:30 GMT

Protected "2dvm" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:29, 6 January 2013

OCA at 09:29, 6 January 2013

OCA — Sun, 06 Jan 2013 09:29:23 GMT

←Older revision		Revision as of 09:29, 6 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2dvm.png\|left\|200px]]		[[Image:2dvm.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2dvm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2dvm\| PDB=2dvm \| SCENE= }}		{{STRUCTURE_2dvm\| PDB=2dvm \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2DVM~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA].	+	[[2dvm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DVM OCA].
	[[Category: Pyrococcus horikoshii]]		[[Category: Pyrococcus horikoshii]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]
Line 28:		Line 21:
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:04:32 2008''