2ejx - Revision history

OCA at 13:49, 13 March 2024

OCA — Wed, 13 Mar 2024 13:49:56 GMT

←Older revision		Revision as of 13:49, 13 March 2024
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	<StructureSection load='2ejx' size='340' side='right'caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2ejx' size='340' side='right'caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Sulto Sulto~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EJX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii_str._7 Sulfurisphaera tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~STK_08120 (~~[~~https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=273063 SULTO])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.79Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [https://pdbe.org/2ejx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [https://www.ebi.ac.uk/pdbsum/2ejx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ejx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [https://pdbe.org/2ejx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [https://www.ebi.ac.uk/pdbsum/2ejx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ejx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q973T5_SULTO Q973T5_SULTO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 17:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ejx ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ejx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	STK_08120 is a member of the thermoacidophile-specific DUF3211 protein family from Sulfolobus tokodaii strain 7. Its molecular function remains obscure, and sequence similarities for obtaining functional remarks are not available. In this study, the crystal structure of STK_08120 was determined at 1.79 A resolution to predict its probable function using structure similarity searches. The structure adopts an alpha/beta structure of a helix-grip fold, which is found in the START domain proteins with cavities for hydrophobic substrates or ligands. The detailed structural features implied that fatty acids are the primary ligand candidates for STK_08120, and binding assays revealed that the protein bound long-chain saturated fatty acids (>C14) and their trans-unsaturated types with an equal affinity to major fatty acid binding proteins in mammals and plants. Moreover, the structure of an STK_08120-myristic acid complex revealed a unique binding mode among fatty acid binding proteins. These results propose that the thermoacidophile-specific protein family DUF3211 functions as a fatty acid carrier with novel binding mode.
-
-	A Thermoacidophile-Specific Protein Family, DUF3211, Functions as a Fatty Acid Carrier with Novel Binding Mode.,Miyakawa T, Sawano Y, Miyazono KI, Miyauchi Y, Hatano KI, Tanokura M J Bacteriol. 2013 Jul 8. PMID:23836863<ref>PMID:23836863</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2ejx" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Sulto~~]]	+	[[Category: Sulfurisphaera tokodaii str. 7]]
-	[[Category: Hatano, K]]	+	[[Category: Hatano K]]
-	[[Category: Miyakawa, T]]	+	[[Category: Miyakawa T]]
-	[[Category: Miyazono, K]]	+	[[Category: Miyazono K]]
-	[[Category: Nagata, K]]	+	[[Category: Nagata K]]
-	[[Category: Sawano, Y]]	+	[[Category: Sawano Y]]
-	[[Category: Tanokura, M]]	+	[[Category: Tanokura M]]
-	~~[[Category: Arcaea]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Stk_08120]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 12:10, 10 February 2021

OCA — Wed, 10 Feb 2021 12:10:09 GMT

←Older revision		Revision as of 12:10, 10 February 2021
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	==Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii==		==Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii==
-	<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='2ejx' size='340' side='right'caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2EJX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 SULTO])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 SULTO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [~~http~~://pdbe.org/2ejx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ejx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ejx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [https://pdbe.org/2ejx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [https://www.ebi.ac.uk/pdbsum/2ejx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ejx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Sulto]]		[[Category: Sulto]]
	[[Category: Hatano, K]]		[[Category: Hatano, K]]

OCA at 06:48, 6 June 2018

OCA — Wed, 06 Jun 2018 06:48:08 GMT

←Older revision		Revision as of 06:48, 6 June 2018
Line 1:		Line 1:
		+
	==Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii==		==Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii==
	<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 SULTO])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 SULTO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://pdbe.org/2ejx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://pdbe.org/2ejx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ejx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/2ejx_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/2ejx_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ejx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:31, 11 September 2015

OCA — Fri, 11 Sep 2015 14:31:43 GMT

←Older revision		Revision as of 14:31, 11 September 2015
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	<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulto Sulto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 ~~Sulfolobus tokodaii str. 7~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 SULTO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://pdbe.org/2ejx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2ejx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sulfolobus tokodaii str. 7~~]]	+	[[Category: Sulto]]
	[[Category: Hatano, K]]		[[Category: Hatano, K]]
	[[Category: Miyakawa, T]]		[[Category: Miyakawa, T]]

OCA at 17:45, 25 December 2014

OCA — Thu, 25 Dec 2014 17:45:51 GMT

←Older revision		Revision as of 17:45, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 Sulfolobus tokodaii str. 7])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 Sulfolobus tokodaii str. 7])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Sulfolobus tokodaii str. 7]]		[[Category: Sulfolobus tokodaii str. 7]]
-	[[Category: Hatano, K.]]	+	[[Category: Hatano, K]]
-	[[Category: Miyakawa, T.]]	+	[[Category: Miyakawa, T]]
-	[[Category: Miyazono, K.]]	+	[[Category: Miyazono, K]]
-	[[Category: Nagata, K.]]	+	[[Category: Nagata, K]]
-	[[Category: Sawano, Y.]]	+	[[Category: Sawano, Y]]
-	[[Category: Tanokura, M.]]	+	[[Category: Tanokura, M]]
	[[Category: Arcaea]]		[[Category: Arcaea]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]

OCA at 04:14, 3 October 2014

OCA — Fri, 03 Oct 2014 04:14:25 GMT

←Older revision		Revision as of 04:14, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2ejx\| PDB~~=2ejx \| ~~SCENE~~= }}	+	==Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii==
-	===~~Crystal~~ structure of the ~~hypothetical protein~~ STK_08120 ~~from~~ Sulfolobus tokodaii===	+	<StructureSection load='2ejx' size='340' side='right' caption='[[2ejx]], [[Resolution\|resolution]] 1.79Å' scene=''>
-	~~{{ABSTRACT_PUBMED_23836863}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EJX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">STK_08120 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273063 Sulfolobus tokodaii str. 7])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ejx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ejx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ejx RCSB], [http://www.ebi.ac.uk/pdbsum/2ejx PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/2ejx_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	STK_08120 is a member of the thermoacidophile-specific DUF3211 protein family from Sulfolobus tokodaii strain 7. Its molecular function remains obscure, and sequence similarities for obtaining functional remarks are not available. In this study, the crystal structure of STK_08120 was determined at 1.79 A resolution to predict its probable function using structure similarity searches. The structure adopts an alpha/beta structure of a helix-grip fold, which is found in the START domain proteins with cavities for hydrophobic substrates or ligands. The detailed structural features implied that fatty acids are the primary ligand candidates for STK_08120, and binding assays revealed that the protein bound long-chain saturated fatty acids (>C14) and their trans-unsaturated types with an equal affinity to major fatty acid binding proteins in mammals and plants. Moreover, the structure of an STK_08120-myristic acid complex revealed a unique binding mode among fatty acid binding proteins. These results propose that the thermoacidophile-specific protein family DUF3211 functions as a fatty acid carrier with novel binding mode.

-	~~==About this Structure==~~	+	A Thermoacidophile-Specific Protein Family, DUF3211, Functions as a Fatty Acid Carrier with Novel Binding Mode.,Miyakawa T, Sawano Y, Miyazono KI, Miyauchi Y, Hatano KI, Tanokura M J Bacteriol. 2013 Jul 8. PMID:23836863<ref>PMID:23836863</ref>
-	~~[[2ejx]] is~~ a ~~1 chain structure~~ with ~~sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sulfolobus_tokodaii_str~~.~~_7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:023836863</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Sulfolobus tokodaii str. 7]]		[[Category: Sulfolobus tokodaii str. 7]]
	[[Category: Hatano, K.]]		[[Category: Hatano, K.]]

OCA at 04:34, 18 July 2013

OCA — Thu, 18 Jul 2013 04:34:57 GMT

←Older revision		Revision as of 04:34, 18 July 2013
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-	[[Image:2ejx.png\|left\|200px]]
-
	{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}		{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}
-		+	===Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii===
-	===Crystal structure of the hypothetical protein ~~ST0812~~ from Sulfolobus tokodaii===	+	{{ABSTRACT_PUBMED_23836863}}
-		+

	==About this Structure==		==About this Structure==
	[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].		[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:023836863</ref><references group="xtra"/><references/>
	[[Category: Sulfolobus tokodaii str. 7]]		[[Category: Sulfolobus tokodaii str. 7]]
	[[Category: Hatano, K.]]		[[Category: Hatano, K.]]
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	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: ~~St0812~~]]	+	[[Category: Stk_08120]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "2ejx" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 10:17:04 GMT

Protected "2ejx" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:17, 6 January 2013

OCA at 10:17, 6 January 2013

OCA — Sun, 06 Jan 2013 10:17:01 GMT

←Older revision		Revision as of 10:17, 6 January 2013
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-	{{Seed}}
	[[Image:2ejx.png\|left\|200px]]		[[Image:2ejx.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}		{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2EJX~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_tokodaii~~ Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].	+	[[2ejx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii_str._7 Sulfolobus tokodaii str. 7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].
-	[[Category: Sulfolobus tokodaii]]	+	[[Category: Sulfolobus tokodaii str. 7]]
	[[Category: Hatano, K.]]		[[Category: Hatano, K.]]
	[[Category: Miyakawa, T.]]		[[Category: Miyakawa, T.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:35:57 2009''

OCA at 22:35, 17 February 2009

OCA — Tue, 17 Feb 2009 22:35:58 GMT

←Older revision		Revision as of 22:35, 17 February 2009
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-	[[Image:2ejx.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2ejx.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}		{{STRUCTURE_2ejx\| PDB=2ejx \| SCENE= }}

-	~~'''~~Crystal structure of the hypothetical protein ST0812 from Sulfolobus tokodaii~~'''~~	+	===Crystal structure of the hypothetical protein ST0812 from Sulfolobus tokodaii===


	==About this Structure==		==About this Structure==
-	2EJX is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].	+	2EJX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EJX OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Sulfolobus tokodaii]]		[[Category: Sulfolobus tokodaii]]
	[[Category: Hatano, K.]]		[[Category: Hatano, K.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 02~~:39:~~33 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:35:57 2009''