2fg0 - Revision history

OCA at 06:44, 25 January 2023

OCA — Wed, 25 Jan 2023 06:44:40 GMT

←Older revision		Revision as of 06:44, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='2fg0' size='340' side='right'caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2fg0' size='340' side='right'caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Nosp7 Nosp7~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_punctiforme_PCC_73102 Nostoc punctiforme PCC 73102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [https://pdbe.org/2fg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [https://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fg0 ProSAT], [https://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [https://pdbe.org/2fg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [https://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fg0 ProSAT], [https://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B2J9B4_NOSP7 B2J9B4_NOSP7]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Nosp7]]~~	+	[[Category: Nostoc punctiforme PCC 73102]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: Nlpc/p60 family]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 07:16, 24 February 2021

OCA — Wed, 24 Feb 2021 07:16:48 GMT

←Older revision		Revision as of 07:16, 24 February 2021
Line 1:		Line 1:

	==Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution==		==Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution==
-	<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='2fg0' size='340' side='right'caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [~~http~~://pdbe.org/2fg0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fg0 ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [https://pdbe.org/2fg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [https://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fg0 ProSAT], [https://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fg0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fg0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nosp7]]		[[Category: Nosp7]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 07:37, 18 October 2017

OCA — Wed, 18 Oct 2017 07:37:59 GMT

←Older revision		Revision as of 07:37, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution==		==Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution==
	<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://pdbe.org/2fg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://pdbe.org/2fg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fg0 ProSAT], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fg0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:47, 11 September 2015

OCA — Fri, 11 Sep 2015 13:47:24 GMT

←Older revision		Revision as of 13:47, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Nostoc_punctiforme Nostoc punctiforme~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nosp7 Nosp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~272131 Nostoc punctiforme~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63737 NOSP7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://pdbe.org/2fg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2fg0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Nostoc punctiforme~~]]	+	[[Category: Nosp7]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 08:18, 16 January 2015

OCA — Fri, 16 Jan 2015 08:18:12 GMT

←Older revision		Revision as of 08:18, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nostoc_punctiforme Nostoc punctiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nostoc_punctiforme Nostoc punctiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272131 Nostoc punctiforme])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272131 Nostoc punctiforme])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Nostoc punctiforme]]		[[Category: Nostoc punctiforme]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Nlpc/p60 family]]		[[Category: Nlpc/p60 family]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 00:09, 30 September 2014

OCA — Tue, 30 Sep 2014 00:09:10 GMT

←Older revision		Revision as of 00:09, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2fg0.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution==
		+	<StructureSection load='2fg0' size='340' side='right' caption='[[2fg0]], [[Resolution\|resolution]] 1.79Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nostoc_punctiforme Nostoc punctiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FG0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">53686717 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272131 Nostoc punctiforme])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fg0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fg0 RCSB], [http://www.ebi.ac.uk/pdbsum/2fg0 PDBsum], [http://www.topsan.org/Proteins/JCSG/2fg0 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/2fg0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of two homologous endopeptidases from cyanobacteria Anabaena variabilis and Nostoc punctiforme were determined at 1.05 and 1.60 A resolution, respectively, and contain a bacterial SH3-like domain (SH3b) and a ubiquitous cell-wall-associated NlpC/P60 (or CHAP) cysteine peptidase domain. The NlpC/P60 domain is a primitive, papain-like peptidase in the CA clan of cysteine peptidases with a Cys126/His176/His188 catalytic triad and a conserved catalytic core. We deduced from structure and sequence analysis, and then experimentally, that these two proteins act as gamma-D-glutamyl-L-diamino acid endopeptidases (EC 3.4.22.-). The active site is located near the interface between the SH3b and NlpC/P60 domains, where the SH3b domain may help define substrate specificity, instead of functioning as a targeting domain, so that only muropeptides with an N-terminal L-alanine can bind to the active site.

-	~~{{STRUCTURE_2fg0\| PDB=2fg0 \| SCENE= }}~~	+	Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase.,Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA Structure. 2009 Feb 13;17(2):303-13. PMID:19217401<ref>PMID:19217401</ref>

-	~~===Crystal structure~~ of ~~a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1~~.~~79 A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19217401}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2fg0]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Nostoc_punctiforme Nostoc punctiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019217401<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Nostoc punctiforme]]		[[Category: Nostoc punctiforme]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA at 13:20, 30 January 2013

OCA — Wed, 30 Jan 2013 13:20:50 GMT

←Older revision		Revision as of 13:20, 30 January 2013
Line 1:		Line 1:
	[[Image:2fg0.png\|left\|200px]]		[[Image:2fg0.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2fg0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2fg0\| PDB=2fg0 \| SCENE= }}		{{STRUCTURE_2fg0\| PDB=2fg0 \| SCENE= }}

	===Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution===		===Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19217401}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19217401 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19217401}}		{{ABSTRACT_PUBMED_19217401}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19217401~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019217401</ref><references group="xtra"/>
	[[Category: Nostoc punctiforme]]		[[Category: Nostoc punctiforme]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
		+	[[Category: Hydrolase]]
		+	[[Category: Jcsg]]
		+	[[Category: Joint center for structural genomic]]
		+	[[Category: Nlpc/p60 family]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-2]]
		+	[[Category: Structural genomic]]

OCA: Protected "2fg0" [edit=sysop:move=sysop]

OCA — Wed, 23 Mar 2011 06:26:23 GMT

Protected "2fg0" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:26, 23 March 2011

OCA at 06:26, 23 March 2011

OCA — Wed, 23 Mar 2011 06:26:21 GMT

←Older revision		Revision as of 06:26, 23 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2fg0.png\|left\|200px]]		[[Image:2fg0.png\|left\|200px]]

Line 10:		Line 9:
	{{STRUCTURE_2fg0\| PDB=2fg0 \| SCENE= }}		{{STRUCTURE_2fg0\| PDB=2fg0 \| SCENE= }}

-	===Crystal structure of (~~53686717~~) from ~~Nostoc~~ punctiforme ~~PCC~~ 73102 at 1.79 A resolution===	+	===Crystal structure of a putative gamma-d-glutamyl-l-diamino acid endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.79 A resolution===


Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2FG0~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/~~Nostoc_punctiforme_pcc_73102~~ Nostoc punctiforme ~~pcc 73102~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA].	+	[[2fg0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Nostoc_punctiforme Nostoc punctiforme]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:19217401</ref><references group="xtra"/>		<ref group="xtra">PMID:19217401</ref><references group="xtra"/>
-	[[Category: Nostoc punctiforme ~~pcc 73102~~]]	+	[[Category: Nostoc punctiforme]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: 53686717]]
-	[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi]]
-	[[Category: Structural genomic]]
-	[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:41:49 2010''

OCA at 08:32, 22 September 2010

OCA — Wed, 22 Sep 2010 08:32:51 GMT

←Older revision		Revision as of 08:32, 22 September 2010
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2FG0 is a ~~[[Single protein]]~~ structure ~~of sequence~~ from [http://en.wikipedia.org/wiki/Nostoc_punctiforme_pcc_73102 Nostoc punctiforme pcc 73102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA].	+	2FG0 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Nostoc_punctiforme_pcc_73102 Nostoc punctiforme pcc 73102]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FG0 OCA].

	==Reference==		==Reference==
-	Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase., Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Won Han G, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Structure. 2009 Feb 13;17(2):303-313. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/19217401 19217401]~~	+	<ref group="xtra">PMID:19217401</ref><references group="xtra"/>
	[[Category: Nostoc punctiforme pcc 73102]]		[[Category: Nostoc punctiforme pcc 73102]]
-	[[Category: ~~Single protein]]~~	+	[[Category: JCSG, Joint Center for Structural Genomics.]]
-	~~[[Category: Pdbx_ordinal=~~, ~~<PDBx:audit_author~~.]]	+
	[[Category: 53686717]]		[[Category: 53686717]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
Line 35:		Line 34:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Mar~~ 11 20:15:~~24 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 22 11:41:49 2010''