2fhf - Revision history

OCA at 06:59, 9 March 2022

OCA — Wed, 09 Mar 2022 06:59:08 GMT

←Older revision		Revision as of 06:59, 9 March 2022
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	<StructureSection load='2fhf' size='340' side='right'caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2fhf' size='340' side='right'caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Klebsiella_aerogenes~~ Klebsiella ~~aerogenes~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FHF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae Klebsiella pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</div></td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</div></td></tr>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Klebsiella ~~aerogenes~~]]	+	[[Category: Klebsiella pneumoniae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]

OCA at 09:54, 5 May 2021

OCA — Wed, 05 May 2021 09:54:36 GMT

←Older revision		Revision as of 09:54, 5 May 2021
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	<StructureSection load='2fhf' size='340' side='right'caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2fhf' size='340' side='right'caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FHF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [~~http~~://pdbe.org/2fhf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fhf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fhf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [https://pdbe.org/2fhf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [https://www.ebi.ac.uk/pdbsum/2fhf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fhf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:24, 24 July 2019

OCA — Wed, 24 Jul 2019 09:24:59 GMT

←Older revision		Revision as of 09:24, 24 July 2019
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	==Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose==		==Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose==
-	<StructureSection load='2fhf' size='340' side='right' caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>	+	<StructureSection load='2fhf' size='340' side='right'caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fh/2fhf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fh/2fhf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</div>		</div>
	<div class="pdbe-citations 2fhf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2fhf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Amylase 3D structures\|Amylase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Klebsiella aerogenes]]		[[Category: Klebsiella aerogenes]]
		+	[[Category: Large Structures]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]
	[[Category: Demirkan-Sarikaya, E]]		[[Category: Demirkan-Sarikaya, E]]

OCA at 07:38, 18 October 2017

OCA — Wed, 18 Oct 2017 07:38:50 GMT

←Older revision		Revision as of 07:38, 18 October 2017
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		+
	==Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose==		==Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose==
	<StructureSection load='2fhf' size='340' side='right' caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2fhf' size='340' side='right' caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacter_aerogenes Enterobacter~~ aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://pdbe.org/2fhf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://pdbe.org/2fhf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fhf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fhf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 2fhf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2fhf" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Amylase\|Amylase]]
-	*[[User:Gabriel Pons/Sandbox 2\|User:Gabriel Pons/Sandbox 2]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacter~~ aerogenes]]	+	[[Category: Klebsiella aerogenes]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]
	[[Category: Demirkan-Sarikaya, E]]		[[Category: Demirkan-Sarikaya, E]]

OCA at 22:24, 11 September 2015

OCA — Fri, 11 Sep 2015 22:24:33 GMT

←Older revision		Revision as of 22:24, 11 September 2015
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://pdbe.org/2fhf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2fhf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 08:29, 16 January 2015

OCA — Fri, 16 Jan 2015 08:29:08 GMT

←Older revision		Revision as of 08:29, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	==See Also==		==See Also==
	*[[Amylase\|Amylase]]		*[[Amylase\|Amylase]]
		+	*[[User:Gabriel Pons/Sandbox 2\|User:Gabriel Pons/Sandbox 2]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 36:
	[[Category: Enterobacter aerogenes]]		[[Category: Enterobacter aerogenes]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]
-	[[Category: Demirkan-Sarikaya, E.]]	+	[[Category: Demirkan-Sarikaya, E]]
-	[[Category: Iwamoto, H.]]	+	[[Category: Iwamoto, H]]
-	[[Category: Katsuya, Y.]]	+	[[Category: Katsuya, Y]]
-	[[Category: Malle, D.]]	+	[[Category: Malle, D]]
-	[[Category: Mikami, B.]]	+	[[Category: Mikami, B]]
-	[[Category: Yoon, H J.]]	+	[[Category: Yoon, H J]]
	[[Category: Alpha-amylase-family]]		[[Category: Alpha-amylase-family]]
	[[Category: Beta-alpha-barrel]]		[[Category: Beta-alpha-barrel]]

OCA at 03:37, 29 September 2014

OCA — Mon, 29 Sep 2014 03:37:52 GMT

←Older revision		Revision as of 03:37, 29 September 2014
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-	[[~~Image:~~2fhf.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose==
		+	<StructureSection load='2fhf' size='340' side='right' caption='[[2fhf]], [[Resolution\|resolution]] 1.65Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FHF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2fgz\|2fgz]], [[2fh6\|2fh6]], [[2fh8\|2fh8]], [[2fhb\|2fhb]], [[2fhc\|2fhc]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pullulanase Pullulanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.41 3.2.1.41] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fhf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fhf RCSB], [http://www.ebi.ac.uk/pdbsum/2fhf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fh/2fhf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structures of Klebsiella pneumoniae pullulanase and its complex with glucose (G1), maltose (G2), isomaltose (isoG2), maltotriose (G3), or maltotetraose (G4), have been refined at around 1.7-1.9A resolution by using a synchrotron radiation source at SPring-8. The refined models contained 920-1052 amino acid residues, 942-1212 water molecules, four or five calcium ions, and the bound sugar moieties. The enzyme is composed of five domains (N1, N2, N3, A, and C). The N1 domain was clearly visible only in the structure of the complex with G3 or G4. The N1 and N2 domains are characteristic of pullulanase, while the N3, A, and C domains have weak similarity with those of Pseudomonas isoamylase. The N1 domain was found to be a new type of carbohydrate-binding domain with one calcium site (CBM41). One G1 bound at subsite -2, while two G2 bound at -1 approximately -2 and +2 approximately +1, two G3, -1 approximately -3 and +2 approximately 0', and two G4, -1 approximately -4 and +2 approximately -1'. The two bound G3 and G4 molecules in the active cleft are almost parallel and interact with each other. The subsites -1 approximately -4 and +1 approximately +2, including catalytic residues Glu706 and Asp677, are conserved between pullulanase and alpha-amylase, indicating that pullulanase strongly recognizes branched point and branched sugar residues, while subsites 0' and -1', which recognize the non-reducing end of main-chain alpha-1,4 glucan, are specific to pullulanase and isoamylase. The comparison suggested that the conformational difference around the active cleft, together with the domain organization, determines the different substrate specificities between pullulanase and isoamylase.

-	~~{{STRUCTURE_2fhf\| PDB=2fhf \| SCENE= }}~~	+	Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site.,Mikami B, Iwamoto H, Malle D, Yoon HJ, Demirkan-Sarikaya E, Mezaki Y, Katsuya Y J Mol Biol. 2006 Jun 9;359(3):690-707. Epub 2006 Apr 18. PMID:16650854<ref>PMID:16650854</ref>

-	~~===Crystal Structure Analysis~~ of ~~Klebsiella pneumoniae pullulanase complexed with maltotetraose===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16650854}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2fhf]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA].~~	+

	==See Also==		==See Also==
-	*[[~~Alpha-~~Amylase\|~~Alpha-~~Amylase]]	+	*[[Amylase\|Amylase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016650854<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Enterobacter aerogenes]]		[[Category: Enterobacter aerogenes]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]

OCA at 21:00, 20 October 2012

OCA — Sat, 20 Oct 2012 21:00:40 GMT

←Older revision		Revision as of 21:00, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[2fhf]] is a 1 chain structure ~~of [[Alpha-Amylase]]~~ with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA].	+	[[2fhf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA].

	==See Also==		==See Also==

OCA: Protected "2fhf" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 12:18:07 GMT

Protected "2fhf" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:18, 27 July 2012

OCA at 12:18, 27 July 2012

OCA — Fri, 27 Jul 2012 12:18:06 GMT

←Older revision		Revision as of 12:18, 27 July 2012
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-	{{Seed}}
	[[Image:2fhf.png\|left\|200px]]		[[Image:2fhf.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2fhf\| PDB=2fhf \| SCENE= }}		{{STRUCTURE_2fhf\| PDB=2fhf \| SCENE= }}

	===Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose===		===Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16650854}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16650854 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_16650854}}		{{ABSTRACT_PUBMED_16650854}}

	==About this Structure==		==About this Structure==
-	~~2FHF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Klebsiella_aerogenes Klebsiella~~ aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA].	+	[[2fhf]] is a 1 chain structure of [[Alpha-Amylase]] with sequence from [http://en.wikipedia.org/wiki/Enterobacter_aerogenes Enterobacter aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FHF OCA].
		+
		+	==See Also==
		+	*[[Alpha-Amylase\|Alpha-Amylase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16650854~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016650854</ref><references group="xtra"/>
-	[[Category: ~~Klebsiella~~ aerogenes]]	+	[[Category: Enterobacter aerogenes]]
	[[Category: Pullulanase]]		[[Category: Pullulanase]]
	[[Category: Demirkan-Sarikaya, E.]]		[[Category: Demirkan-Sarikaya, E.]]
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	[[Category: Beta-alpha-barrel]]		[[Category: Beta-alpha-barrel]]
	[[Category: Complex with maltotetraose]]		[[Category: Complex with maltotetraose]]
		+	[[Category: Hydrolase]]
	[[Category: Multiple domain]]		[[Category: Multiple domain]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:53:53 2009''