2fz1 - Revision history

OCA at 09:33, 30 August 2023

OCA — Wed, 30 Aug 2023 09:33:44 GMT

←Older revision		Revision as of 09:33, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2fz1' size='340' side='right'caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2fz1' size='340' side='right'caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Tymva Tymva~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus_(Australian_isolate) Turnip yellow mosaic virus (Australian isolate)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1auy\|1auy]]~~, [[~~1fz2~~\|~~1fz2~~]]~~, [[1w39\|1w39]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.9Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [https://pdbe.org/2fz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [https://www.ebi.ac.uk/pdbsum/2fz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [https://pdbe.org/2fz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [https://www.ebi.ac.uk/pdbsum/2fz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz1 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/COAT_TYMVA COAT_TYMVA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Tymva]]~~	+	[[Category: Larson SB]]
-	[[Category: Larson~~, S B~~]]	+	[[Category: Lucas RW]]
-	[[Category: Lucas~~, R W~~]]	+	[[Category: McPherson A]]
-	[[Category: McPherson, A]]	+
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Coat protein]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Plant virus]]~~	+
-	~~[[Category: Tymoviruse]]~~	+
-	~~[[Category: Tymv]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 14:38, 29 December 2021

OCA — Wed, 29 Dec 2021 14:38:25 GMT

←Older revision		Revision as of 14:38, 29 December 2021
Line 3:		Line 3:
	<StructureSection load='2fz1' size='340' side='right'caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2fz1' size='340' side='right'caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [~~http~~://pdbe.org/2fz1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fz1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [https://pdbe.org/2fz1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [https://www.ebi.ac.uk/pdbsum/2fz1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:07, 27 March 2020

OCA — Fri, 27 Mar 2020 11:07:07 GMT

←Older revision		Revision as of 11:07, 27 March 2020
Line 1:		Line 1:

	==Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K==		==Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K==
-	<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>	+	<StructureSection load='2fz1' size='340' side='right'caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Tymva]]		[[Category: Tymva]]
	[[Category: Larson, S B]]		[[Category: Larson, S B]]

OCA at 07:29, 20 June 2018

OCA — Wed, 20 Jun 2018 07:29:21 GMT

←Older revision		Revision as of 07:29, 20 June 2018
Line 1:		Line 1:
		+
	==Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K==		==Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K==
	<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://pdbe.org/2fz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://pdbe.org/2fz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fz1 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/2fz1_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/2fz1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:00, 9 February 2016

OCA — Tue, 09 Feb 2016 07:00:52 GMT

←Older revision		Revision as of 07:00, 9 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fz1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:45, 10 September 2015

OCA — Thu, 10 Sep 2015 19:45:58 GMT

←Older revision		Revision as of 19:45, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Turnip_yellow_mosaic_virus Turnip yellow mosaic virus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Tymva Tymva]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://pdbe.org/2fz1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2fz1" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Turnip yellow mosaic virus~~]]	+	[[Category: Tymva]]
	[[Category: Larson, S B]]		[[Category: Larson, S B]]
	[[Category: Lucas, R W]]		[[Category: Lucas, R W]]

OCA at 08:44, 16 January 2015

OCA — Fri, 16 Jan 2015 08:44:42 GMT

←Older revision		Revision as of 08:44, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Turnip yellow mosaic virus]]		[[Category: Turnip yellow mosaic virus]]
-	[[Category: Larson, S B.]]	+	[[Category: Larson, S B]]
-	[[Category: Lucas, R W.]]	+	[[Category: Lucas, R W]]
-	[[Category: McPherson, A.]]	+	[[Category: McPherson, A]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]
	[[Category: Coat protein]]		[[Category: Coat protein]]

OCA at 08:21, 30 September 2014

OCA — Tue, 30 Sep 2014 08:21:27 GMT

←Older revision		Revision as of 08:21, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2fz1.~~png~~\|~~left~~\|200px]]	+	==Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K==
		+	<StructureSection load='2fz1' size='340' side='right' caption='[[2fz1]], [[Resolution\|resolution]] 2.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FZ1 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1auy\|1auy]], [[1fz2\|1fz2]], [[1w39\|1w39]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fz1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fz1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fz1 RCSB], [http://www.ebi.ac.uk/pdbsum/2fz1 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fz/2fz1_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Difference electron density maps, based on structure factor amplitudes and experimental phases from crystals of wild-type turnip yellow mosaic virus and those of empty capsids prepared by freeze-thawing, show a large portion of the encapsidated RNA to have an icosahedral distribution. Four unique segments of base-paired, double-helical RNA, one to two turns in length, lie between 33-A and 101-A radius and are organized about either 2-fold or 5-fold icosahedral axes. In addition, single-stranded loops of RNA invade the pentameric and hexameric capsomeres where they contact the interior capsid surface. The remaining RNA, not seen in electron density maps, must serve as connecting links between these secondary structural elements and is likely icosahedrally disordered. The distribution of RNA observed crystallographically appears to be in agreement with models based on biochemical data and secondary structural analyses.

-	~~{{STRUCTURE_2fz1\| PDB=2fz1 \| SCENE= }}~~	+	The RNA of turnip yellow mosaic virus exhibits icosahedral order.,Larson SB, Lucas RW, Greenwood A, McPherson A Virology. 2005 Apr 10;334(2):245-54. PMID:15780874<ref>PMID:15780874</ref>

-	~~===Structure~~ of ~~Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15780874}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2fz1]] is a 3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]~~. ~~Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA].~~	+	</StructureSection>
-		+
-	~~==Reference==~~	+
-	<~~ref group="xtra"~~>~~PMID:015780874~~</~~ref~~>~~<ref group~~=~~"xtra">PMID:008784351</ref><ref group~~=~~"xtra">PMID:007716173</ref><ref group~~=~~"xtra">PMID:015321716~~</~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Turnip yellow mosaic virus]]		[[Category: Turnip yellow mosaic virus]]
	[[Category: Larson, S B.]]		[[Category: Larson, S B.]]

OCA at 12:37, 23 January 2013

OCA — Wed, 23 Jan 2013 12:37:11 GMT

←Older revision		Revision as of 12:37, 23 January 2013
Line 1:		Line 1:
	[[Image:2fz1.png\|left\|200px]]		[[Image:2fz1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2fz1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2fz1\| PDB=2fz1 \| SCENE= }}		{{STRUCTURE_2fz1\| PDB=2fz1 \| SCENE= }}

	===Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K===		===Structure of Empty Head Turnip Yellow Mosaic Virus (ATC) at 100 K===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15780874}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15780874 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15780874}}		{{ABSTRACT_PUBMED_15780874}}

	==About this Structure==		==About this Structure==
-	[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Viruses Viruses~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA].	+	[[2fz1]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Turnip_yellow_mosaic_virus Turnip yellow mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FZ1 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15780874~~</ref><ref group="xtra">PMID:~~8784351~~</ref><ref group="xtra">PMID:~~7716173~~</ref><ref group="xtra">PMID:~~15321716~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015780874</ref><ref group="xtra">PMID:008784351</ref><ref group="xtra">PMID:007716173</ref><ref group="xtra">PMID:015321716</ref><references group="xtra"/>
-	[[Category: ~~Viruses~~]]	+	[[Category: Turnip yellow mosaic virus]]
	[[Category: Larson, S B.]]		[[Category: Larson, S B.]]
	[[Category: Lucas, R W.]]		[[Category: Lucas, R W.]]
Line 33:		Line 22:
	[[Category: Tymoviruse]]		[[Category: Tymoviruse]]
	[[Category: Tymv]]		[[Category: Tymv]]
		+	[[Category: Virus]]

OCA: Protected "2fz1" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 19:25:51 GMT

Protected "2fz1" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:25, 14 March 2011