2g1z - Revision history

OCA at 13:51, 13 March 2024

OCA — Wed, 13 Mar 2024 13:51:34 GMT

←Older revision		Revision as of 13:51, 13 March 2024
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [https://pdbe.org/2g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [https://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [https://pdbe.org/2g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [https://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	We describe the packing features of the oligonucleotide duplex d(AAATTT)2, as determined by X-ray diffraction. There is little information on sequences that only contain A and T bases. The present structure confirms that these sequences tend to pack as a helical arrangement of stacked oligonucleotides in a B conformation with Watson-Crick hydrogen bonding. Our results demonstrate that the virtual TA base step between stacked duplexes has a negative twist that improves base stacking. This observation is consistent with the low stability of TA base steps in B-form DNA.
-
-	Packing features of the all-AT oligonucleotide d(AAATTT).,Valls N, Santaolalla A, Campos JL, Subirana JA J Biomol Struct Dyn. 2007 Jun;24(6):547-52. PMID:17508776<ref>PMID:17508776</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2g1z" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 13:05, 26 July 2023

OCA — Wed, 26 Jul 2023 13:05:43 GMT

←Older revision		Revision as of 13:05, 26 July 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [https://pdbe.org/2g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [https://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.11Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [https://pdbe.org/2g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [https://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Campos~~, J L~~]]	+	[[Category: Campos JL]]
-	[[Category: Santaolalla, A]]	+	[[Category: Santaolalla A]]
-	[[Category: Subirana~~, J A~~]]	+	[[Category: Subirana JA]]
-	[[Category: Valls, N]]	+	[[Category: Valls N]]
-	~~[[Category: Adenine]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Oligonucleotide]]~~	+
-	~~[[Category: Thymine~~]]	+

OCA at 20:40, 20 October 2021

OCA — Wed, 20 Oct 2021 20:40:21 GMT

←Older revision		Revision as of 20:40, 20 October 2021
Line 3:		Line 3:
	<StructureSection load='2g1z' size='340' side='right'caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>		<StructureSection load='2g1z' size='340' side='right'caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [~~http~~://pdbe.org/2g1z PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [https://pdbe.org/2g1z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [https://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:06, 6 November 2019

OCA — Wed, 06 Nov 2019 07:06:45 GMT

←Older revision		Revision as of 07:06, 6 November 2019
Line 1:		Line 1:

	==X-ray structure of the oligonucleotide sequence d(AAATTT)==		==X-ray structure of the oligonucleotide sequence d(AAATTT)==
-	<StructureSection load='2g1z' size='340' side='right' caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>	+	<StructureSection load='2g1z' size='340' side='right'caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Campos, J L]]		[[Category: Campos, J L]]
	[[Category: Santaolalla, A]]		[[Category: Santaolalla, A]]

OCA at 07:03, 20 June 2018

OCA — Wed, 20 Jun 2018 07:03:16 GMT

←Older revision		Revision as of 07:03, 20 June 2018
Line 1:		Line 1:
		+
	==X-ray structure of the oligonucleotide sequence d(AAATTT)==		==X-ray structure of the oligonucleotide sequence d(AAATTT)==
	<StructureSection load='2g1z' size='340' side='right' caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>		<StructureSection load='2g1z' size='340' side='right' caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [http://pdbe.org/2g1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [http://www.ebi.ac.uk/pdbsum/2g1z PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [http://pdbe.org/2g1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [http://www.ebi.ac.uk/pdbsum/2g1z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2g1z ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:33, 11 September 2015

OCA — Fri, 11 Sep 2015 14:33:49 GMT

←Older revision		Revision as of 14:33, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [http://www.ebi.ac.uk/pdbsum/2g1z PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [http://pdbe.org/2g1z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [http://www.ebi.ac.uk/pdbsum/2g1z PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2g1z" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:07, 16 January 2015

OCA — Fri, 16 Jan 2015 09:07:52 GMT

←Older revision		Revision as of 09:07, 16 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Campos, J L.]]	+	[[Category: Campos, J L]]
-	[[Category: Santaolalla, A.]]	+	[[Category: Santaolalla, A]]
-	[[Category: Subirana, J A.]]	+	[[Category: Subirana, J A]]
-	[[Category: Valls, N.]]	+	[[Category: Valls, N]]
	[[Category: Adenine]]		[[Category: Adenine]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Oligonucleotide]]		[[Category: Oligonucleotide]]
	[[Category: Thymine]]		[[Category: Thymine]]

OCA at 15:39, 12 October 2014

OCA — Sun, 12 Oct 2014 15:39:48 GMT

←Older revision		Revision as of 15:39, 12 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2g1z.~~png\|left\|200px~~]]	+	==X-ray structure of the oligonucleotide sequence d(AAATTT)==
		+	<StructureSection load='2g1z' size='340' side='right' caption='[[2g1z]], [[Resolution\|resolution]] 3.11Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G1Z FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g1z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g1z OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g1z RCSB], [http://www.ebi.ac.uk/pdbsum/2g1z PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We describe the packing features of the oligonucleotide duplex d(AAATTT)2, as determined by X-ray diffraction. There is little information on sequences that only contain A and T bases. The present structure confirms that these sequences tend to pack as a helical arrangement of stacked oligonucleotides in a B conformation with Watson-Crick hydrogen bonding. Our results demonstrate that the virtual TA base step between stacked duplexes has a negative twist that improves base stacking. This observation is consistent with the low stability of TA base steps in B-form DNA.

-	~~{{STRUCTURE_2g1z\| PDB=2g1z \| SCENE= }}~~	+	Packing features of the all-AT oligonucleotide d(AAATTT).,Valls N, Santaolalla A, Campos JL, Subirana JA J Biomol Struct Dyn. 2007 Jun;24(6):547-52. PMID:17508776<ref>PMID:17508776</ref>

-	~~===X-ray structure~~ of the ~~oligonucleotide sequence d(AAATTT)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17508776}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2g1z]] is a 3 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2G1Z OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017508776<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Campos, J L.]]		[[Category: Campos, J L.]]
	[[Category: Santaolalla, A.]]		[[Category: Santaolalla, A.]]

OCA: Protected "2g1z" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:42:40 GMT

Protected "2g1z" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:42, 7 January 2013

OCA at 13:42, 7 January 2013

OCA — Mon, 07 Jan 2013 13:42:36 GMT

←Older revision		Revision as of 13:42, 7 January 2013
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-	{{Seed}}
	[[Image:2g1z.png\|left\|200px]]		[[Image:2g1z.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2g1z", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2g1z\| PDB=2g1z \| SCENE= }}		{{STRUCTURE_2g1z\| PDB=2g1z \| SCENE= }}

	===X-ray structure of the oligonucleotide sequence d(AAATTT)===		===X-ray structure of the oligonucleotide sequence d(AAATTT)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17508776}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17508776 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17508776}}		{{ABSTRACT_PUBMED_17508776}}

	==About this Structure==		==About this Structure==
-	~~2G1Z~~ is a 3 ~~chains~~ structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA].	+	[[2g1z]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G1Z OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17508776~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017508776</ref><references group="xtra"/>
	[[Category: Campos, J L.]]		[[Category: Campos, J L.]]
	[[Category: Santaolalla, A.]]		[[Category: Santaolalla, A.]]
Line 32:		Line 20:
	[[Category: Oligonucleotide]]		[[Category: Oligonucleotide]]
	[[Category: Thymine]]		[[Category: Thymine]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 18:19:52 2009''