2g2x - Revision history

OCA at 09:35, 30 August 2023

OCA — Wed, 30 Aug 2023 09:35:21 GMT

←Older revision		Revision as of 09:35, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2g2x' size='340' side='right'caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2g2x' size='340' side='right'caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Psepk Psepk~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G2X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [https://pdbe.org/2g2x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [https://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2x ProSAT], [https://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [https://pdbe.org/2g2x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [https://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2x ProSAT], [https://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q88CH6_PSEPK Q88CH6_PSEPK]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Psepk~~]]	+	[[Category: Pseudomonas putida KT2440]]
-	[[Category: Abashidze, M]]	+	[[Category: Abashidze M]]
-	[[Category: Acton, T]]	+	[[Category: Acton T]]
-	[[Category: Chen, Y]]	+	[[Category: Chen Y]]
-	[[Category: Conover, K]]	+	[[Category: Conover K]]
-	[[Category: Cunningham, K]]	+	[[Category: Cunningham K]]
-	[[Category: Ho~~, C K~~]]	+	[[Category: Ho CK]]
-	[[Category: Hunt~~, J F~~]]	+	[[Category: Hunt JF]]
-	[[Category: Janjua, H]]	+	[[Category: Janjua H]]
-	[[Category: Kuzin~~, A P~~]]	+	[[Category: Kuzin AP]]
-	[[Category: Ma, L C]]	+	[[Category: Ma L-C]]
-	[[Category: Montelione, G]]	+	[[Category: Montelione G]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Tong L]]
-	[[Category: Tong, L]]	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: Ppr72]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 14:39, 29 December 2021

OCA — Wed, 29 Dec 2021 14:39:27 GMT

←Older revision		Revision as of 14:39, 29 December 2021
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	<StructureSection load='2g2x' size='340' side='right'caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2g2x' size='340' side='right'caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2G2X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [~~http~~://pdbe.org/2g2x PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2x ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [https://pdbe.org/2g2x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [https://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2x ProSAT], [https://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:08, 27 March 2020

OCA — Fri, 27 Mar 2020 11:08:12 GMT

←Older revision		Revision as of 11:08, 27 March 2020
Line 1:		Line 1:

	==X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.==		==X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.==
-	<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='2g2x' size='340' side='right'caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Psepk]]		[[Category: Psepk]]
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]

OCA at 07:23, 20 June 2018

OCA — Wed, 20 Jun 2018 07:23:37 GMT

←Older revision		Revision as of 07:23, 20 June 2018
Line 1:		Line 1:
		+
	==X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.==		==X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.==
	<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://pdbe.org/2g2x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://pdbe.org/2g2x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2g2x ProSAT], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g2/2g2x_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g2/2g2x_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g2x ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:08, 11 September 2015

OCA — Fri, 11 Sep 2015 17:08:58 GMT

←Older revision		Revision as of 17:08, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_putida Pseudomonas putida~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://pdbe.org/2g2x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2g2x" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas putida~~]]	+	[[Category: Psepk]]
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]
	[[Category: Acton, T]]		[[Category: Acton, T]]

OCA at 19:24, 25 December 2014

OCA — Thu, 25 Dec 2014 19:24:43 GMT

←Older revision		Revision as of 19:24, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>		<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
-	[[Category: Abashidze, M.]]	+	[[Category: Abashidze, M]]
-	[[Category: Acton, T.]]	+	[[Category: Acton, T]]
-	[[Category: Chen, Y.]]	+	[[Category: Chen, Y]]
-	[[Category: Conover, K.]]	+	[[Category: Conover, K]]
-	[[Category: Cunningham, K.]]	+	[[Category: Cunningham, K]]
-	[[Category: Ho, C K.]]	+	[[Category: Ho, C K]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Kuzin, A P.]]	+	[[Category: Kuzin, A P]]
-	[[Category: Ma, L C.]]	+	[[Category: Ma, L C]]
-	[[Category: Montelione, G.]]	+	[[Category: Montelione, G]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tong, L.]]	+	[[Category: Tong, L]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: Northeast structural genomics consortium]]
	[[Category: Ppr72]]		[[Category: Ppr72]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 08:41, 3 October 2014

OCA — Fri, 03 Oct 2014 08:41:14 GMT

←Older revision		Revision as of 08:41, 3 October 2014
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-	~~{{STRUCTURE_2g2x\| PDB=2g2x \| SCENE= }}~~	+	==X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.==
-	===X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.===	+	<StructureSection load='2g2x' size='340' side='right' caption='[[2g2x]], [[Resolution\|resolution]] 2.30Å' scene=''>
-	~~{{ABSTRACT_PUBMED_19191354}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2G2X FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2eve\|2eve]], [[2ar1\|2ar1]], [[1zce\|1zce]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2g2x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g2x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2g2x RCSB], [http://www.ebi.ac.uk/pdbsum/2g2x PDBsum], [http://www.topsan.org/Proteins/NESGC/2g2x TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g2/2g2x_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report on several proteins recently solved by structural genomics consortia, in particular by the Northeast Structural Genomics consortium (NESG). The proteins considered in this study differ substantially in their sequences but they share a similar structural core, characterized by a pseudobarrel five-stranded beta sheet. This core corresponds to the PUA domain-like architecture in the SCOP database. By connecting sequence information with structural knowledge, we characterize a new subgroup of these proteins that we propose to be distinctly different from previously described PUA domain-like domains such as PUA proper or ASCH. We refer to these newly defined domains as EVE. Although EVE may have retained the ability of PUA domains to bind RNA, the available experimental and computational data suggests that both the details of its molecular function and its cellular function differ from those of other PUA domain-like domains. This study of EVE and its relatives illustrates how the combination of structure and genomics creates new insights by connecting a cornucopia of structures that map to the same evolutionary potential. Primary sequence information alone would have not been sufficient to reveal these evolutionary links.

-	~~==About this Structure==~~	+	Structural genomics reveals EVE as a new ASCH/PUA-related domain.,Bertonati C, Punta M, Fischer M, Yachdav G, Forouhar F, Zhou W, Kuzin AP, Seetharaman J, Abashidze M, Ramelot TA, Kennedy MA, Cort JR, Belachew A, Hunt JF, Tong L, Montelione GT, Rost B Proteins. 2009 May 15;75(3):760-73. PMID:19191354<ref>PMID:19191354</ref>
-	~~[[2g2x]] is~~ a ~~3 chain structure with sequence from [http:~~/~~/en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_putida Pseudomonas putida]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:019191354</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]

OCA at 08:42, 23 April 2014

OCA — Wed, 23 Apr 2014 08:42:05 GMT

←Older revision		Revision as of 08:42, 23 April 2014
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-	[[Image:2g2x.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_2g2x", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2g2x\| PDB=2g2x \| SCENE= }}		{{STRUCTURE_2g2x\| PDB=2g2x \| SCENE= }}
-
	===X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.===		===X-Ray Crystal Structure Protein Q88CH6 from Pseudomonas putida. Northeast Structural Genomics Consortium Target PpR72.===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19191354}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19191354 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19191354}}		{{ABSTRACT_PUBMED_19191354}}

	==About this Structure==		==About this Structure==
-	[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_putida_kt2440~~ Pseudomonas putida ~~kt2440~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA].	+	[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19191354~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019191354</ref><references group="xtra"/><references/>
-	[[Category: Pseudomonas putida ~~kt2440~~]]	+	[[Category: Pseudomonas putida]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]
	[[Category: Acton, T.]]		[[Category: Acton, T.]]

OCA: Protected "2g2x" [edit=sysop:move=sysop]

OCA — Wed, 29 Dec 2010 18:29:31 GMT

Protected "2g2x" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:29, 29 December 2010

OCA at 18:29, 29 December 2010

OCA — Wed, 29 Dec 2010 18:29:30 GMT

←Older revision		Revision as of 18:29, 29 December 2010
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-	{{Seed}}
	[[Image:2g2x.png\|left\|200px]]		[[Image:2g2x.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2G2X~~ is a 3 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_putida_kt2440 Pseudomonas putida kt2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA].	+	[[2g2x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida_kt2440 Pseudomonas putida kt2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G2X OCA].

	==Reference==		==Reference==
Line 45:		Line 44:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 10 10:54:25 2010''