2gfi - Revision history

OCA at 09:39, 30 August 2023

OCA — Wed, 30 Aug 2023 09:39:57 GMT

←Older revision		Revision as of 09:39, 30 August 2023
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	<StructureSection load='2gfi' size='340' side='right'caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='2gfi' size='340' side='right'caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_24200 Atcc 24200~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Debaryomyces_castellii Debaryomyces castellii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAG:N~~-~~ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.29Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks'>[https~~:~~//en.wikipedia.org/wiki/3~~-~~phytase 3~~-~~phytase], with EC number [https://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [https://pdbe.org/2gfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [https://www.ebi.ac.uk/pdbsum/2gfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [https://pdbe.org/2gfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [https://www.ebi.ac.uk/pdbsum/2gfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfi ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A2TBB4_9ASCO A2TBB4_9ASCO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</div>		</div>
	<div class="pdbe-citations 2gfi" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2gfi" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Phytase 3D structures\|Phytase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~3-phytase]]~~	+	[[Category: Debaryomyces castellii]]
-	~~[[Category: Atcc 24200~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hoh, F]]	+	[[Category: Hoh F]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 14:44, 29 December 2021

OCA — Wed, 29 Dec 2021 14:44:01 GMT

←Older revision		Revision as of 14:44, 29 December 2021
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	<StructureSection load='2gfi' size='340' side='right'caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='2gfi' size='340' side='right'caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_24200 Atcc 24200]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_24200 Atcc 24200]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [~~http~~://pdbe.org/2gfi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gfi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [https://pdbe.org/2gfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [https://www.ebi.ac.uk/pdbsum/2gfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:13, 27 March 2020

OCA — Fri, 27 Mar 2020 11:13:53 GMT

←Older revision		Revision as of 11:13, 27 March 2020
Line 1:		Line 1:

	==Crystal structure of the phytase from D. castellii at 2.3 A==		==Crystal structure of the phytase from D. castellii at 2.3 A==
-	<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>	+	<StructureSection load='2gfi' size='340' side='right'caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_24200 Atcc 24200]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_24200 Atcc 24200]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
Line 33:		Line 33:
	[[Category: 3-phytase]]		[[Category: 3-phytase]]
	[[Category: Atcc 24200]]		[[Category: Atcc 24200]]
		+	[[Category: Large Structures]]
	[[Category: Hoh, F]]		[[Category: Hoh, F]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 07:31, 20 June 2018

OCA — Wed, 20 Jun 2018 07:31:37 GMT

←Older revision		Revision as of 07:31, 20 June 2018
Line 1:		Line 1:
		+
	==Crystal structure of the phytase from D. castellii at 2.3 A==		==Crystal structure of the phytase from D. castellii at 2.3 A==
	<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://pdbe.org/2gfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://pdbe.org/2gfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gfi ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gfi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gfi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:50, 8 February 2016

OCA — Mon, 08 Feb 2016 01:50:08 GMT

←Older revision		Revision as of 01:50, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gfi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:45, 10 September 2015

OCA — Thu, 10 Sep 2015 06:45:10 GMT

←Older revision		Revision as of 06:45, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>		<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Schwanniomyces_capriottii Schwanniomyces capriottii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_24200 Atcc 24200]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://pdbe.org/2gfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2gfi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: 3-phytase]]		[[Category: 3-phytase]]
-	[[Category: ~~Schwanniomyces capriottii~~]]	+	[[Category: Atcc 24200]]
	[[Category: Hoh, F]]		[[Category: Hoh, F]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 09:34, 16 January 2015

OCA — Fri, 16 Jan 2015 09:34:32 GMT

←Older revision		Revision as of 09:34, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Schwanniomyces_capriottii Schwanniomyces capriottii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Schwanniomyces_capriottii Schwanniomyces capriottii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	[[Category: 3-phytase]]		[[Category: 3-phytase]]
	[[Category: Schwanniomyces capriottii]]		[[Category: Schwanniomyces capriottii]]
-	[[Category: Hoh, F.]]	+	[[Category: Hoh, F]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 11:00, 30 September 2014

OCA — Tue, 30 Sep 2014 11:00:45 GMT

←Older revision		Revision as of 11:00, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2gfi.~~png\|left~~\|200px]]	+	==Crystal structure of the phytase from D. castellii at 2.3 A==
		+	<StructureSection load='2gfi' size='340' side='right' caption='[[2gfi]], [[Resolution\|resolution]] 2.29Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Schwanniomyces_capriottii Schwanniomyces capriottii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GFI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-phytase 3-phytase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.8 3.1.3.8] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gfi RCSB], [http://www.ebi.ac.uk/pdbsum/2gfi PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gfi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Phytate (myo-inositol hexakisphosphate) is the primary storage form of phosphate in seeds and legumes (Reddy et al., 1982). Phytases are phosphatases that hydrolyze phytate to less phosphorylated myo-inositol derivatives and inorganic phosphate. The crystal structure of phytase from Debaryomyces castellii has been determined at 2.3 A resolution. The crystals belonged to space group P6(5)22, with unit-cell parameters a = 121.65, c = 332.24 A. The structure was solved by molecular replacement and refined to a final R factor of 15.7% (R(free) = 20.9%). The final model consists of a dimer (with two monomers of 458 residues), five NAG molecules and 628 water molecules.

-	~~{{STRUCTURE_2gfi\| PDB=2gfi \| SCENE= }}~~	+	Structure of Debaryomyces castellii CBS 2923 phytase.,Ragon M, Hoh F, Aumelas A, Chiche L, Moulin G, Boze H Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt, 4):321-6. Epub 2009 Mar 25. PMID:19342770<ref>PMID:19342770</ref>

-	~~===Crystal structure~~ of the ~~phytase from D~~. ~~castellii at 2~~.~~3 A===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19342770}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2gfi]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Schwanniomyces_capriottii Schwanniomyces capriottii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019342770<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: 3-phytase]]		[[Category: 3-phytase]]
	[[Category: Schwanniomyces capriottii]]		[[Category: Schwanniomyces capriottii]]
	[[Category: Hoh, F.]]		[[Category: Hoh, F.]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA: Protected "2gfi" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 12:47:15 GMT

Protected "2gfi" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:47, 7 January 2013

OCA at 12:47, 7 January 2013

OCA — Mon, 07 Jan 2013 12:47:13 GMT

←Older revision		Revision as of 12:47, 7 January 2013
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-	{{Seed}}
	[[Image:2gfi.png\|left\|200px]]		[[Image:2gfi.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2gfi\| PDB=2gfi \| SCENE= }}		{{STRUCTURE_2gfi\| PDB=2gfi \| SCENE= }}

	===Crystal structure of the phytase from D. castellii at 2.3 A===		===Crystal structure of the phytase from D. castellii at 2.3 A===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19342770}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19342770 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19342770}}		{{ABSTRACT_PUBMED_19342770}}

	==About this Structure==		==About this Structure==
-	~~2GFI~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Debaryomyces_castellii Debaryomyces castellii~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA].	+	[[2gfi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Schwanniomyces_capriottii Schwanniomyces capriottii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFI OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19342770~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019342770</ref><references group="xtra"/>
	[[Category: 3-phytase]]		[[Category: 3-phytase]]
-	[[Category: ~~Debaryomyces castellii~~]]	+	[[Category: Schwanniomyces capriottii]]
	[[Category: Hoh, F.]]		[[Category: Hoh, F.]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 29 21:09:14 2009''