2gge - Revision history

OCA at 09:40, 30 August 2023

OCA — Wed, 30 Aug 2023 09:40:34 GMT

←Older revision		Revision as of 09:40, 30 August 2023
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	==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==		==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==
-	<StructureSection load='2gge' size='340' side='right'caption='[[2gge]]' scene=''>	+	<StructureSection load='2gge' size='340' side='right'caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [https://pdbe.org/2gge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [https://www.ebi.ac.uk/pdbsum/2gge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.89Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [https://pdbe.org/2gge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [https://www.ebi.ac.uk/pdbsum/2gge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YITF_BACSU YITF_BACSU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Adams JM]]		[[Category: Adams JM]]

OCA at 19:02, 10 March 2021

OCA — Wed, 10 Mar 2021 19:02:20 GMT

←Older revision		Revision as of 19:02, 10 March 2021
Line 1:		Line 1:

	==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==		==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==
-	<StructureSection load='2gge' size='340' side='right' caption='[[2gge]]~~, [[Resolution\|resolution]] 1.89Å~~' scene=''>	+	<StructureSection load='2gge' size='340' side='right'caption='[[2gge]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GGE FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [https://pdbe.org/2gge PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [https://www.ebi.ac.uk/pdbsum/2gge PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [~~http~~://pdbe.org/2gge PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gge PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 18:

	==See Also==		==See Also==
-	*[[Mandelate racemase/muconate lactonizing enzyme\|Mandelate racemase/muconate lactonizing enzyme]]	+	*[[Mandelate racemase/muconate lactonizing enzyme 3D structures\|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio subtilis ehrenberg 1835~~]]	+	[[Category: Large Structures]]
-	[[Category: Adams~~, J M~~]]	+	[[Category: Adams JM]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Atwell, S]]	+	[[Category: Atwell S]]
-	[[Category: Babbitt, P]]	+	[[Category: Babbitt P]]
-	[[Category: Bain~~, K T~~]]	+	[[Category: Bain KT]]
-	[[Category: Boice, A]]	+	[[Category: Boice A]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Dickey, M]]	+	[[Category: Dickey M]]
-	[[Category: Emtage, S]]	+	[[Category: Emtage S]]
-	[[Category: Gerlt~~, J A~~]]	+	[[Category: Gerlt JA]]
-	[[Category: Gheyi, T]]	+	[[Category: Gheyi T]]
-	[[Category: Groshong, C]]	+	[[Category: Groshong C]]
-	[[Category: Malashkevich~~, V N]]~~	+	[[Category: Malashkevich VN]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ozyurt S]]
-	[[Category: Ozyurt, S]]	+	[[Category: Pieper U]]
-	[[Category: Pieper, U]]	+	[[Category: Powell A]]
-	[[Category: Powell, A]]	+	[[Category: Reyes C]]
-	[[Category: Reyes, C]]	+	[[Category: Rooney I]]
-	[[Category: Rooney, I]]	+	[[Category: Rutter ME]]
-	[[Category: Rutter~~, M E~~]]	+	[[Category: Sali A]]
-	[[Category: Sali, A]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Schwinn KD]]
-	[[Category: Schwinn~~, K D~~]]	+	[[Category: Thompson DA]]
-	[[Category: Thompson~~, D A~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R]]~~	+
-	~~[[Category: Enolase]]~~	+
-	~~[[Category: Mandelate racemase/muconate lactonizing enzyme]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Octamer]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Tim-barrel]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 08:25, 14 November 2018

OCA — Wed, 14 Nov 2018 08:25:41 GMT

←Older revision		Revision as of 08:25, 14 November 2018
Line 3:		Line 3:
	<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>		<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://pdbe.org/2gge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://pdbe.org/2gge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
	</table>		</table>
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2gge_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2gge_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gge ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gge ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Mandelate racemase/muconate lactonizing enzyme\|Mandelate racemase/muconate lactonizing enzyme]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Adams, J M]]		[[Category: Adams, J M]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 07:53, 18 October 2017

OCA — Wed, 18 Oct 2017 07:53:45 GMT

←Older revision		Revision as of 07:53, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==		==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==
	<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>		<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://pdbe.org/2gge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://pdbe.org/2gge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gge ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 23:53, 9 February 2016

OCA — Tue, 09 Feb 2016 23:53:23 GMT

←Older revision		Revision as of 23:53, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gge ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 03:18, 11 September 2015

OCA — Fri, 11 Sep 2015 03:18:28 GMT

←Older revision		Revision as of 03:18, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>		<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://pdbe.org/2gge PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Adams, J M]]		[[Category: Adams, J M]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 12:42, 6 November 2014

OCA — Thu, 06 Nov 2014 12:42:35 GMT

←Older revision		Revision as of 12:42, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Adams, J M.]]	+	[[Category: Adams, J M]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Atwell, S.]]	+	[[Category: Atwell, S]]
-	[[Category: Babbitt, P.]]	+	[[Category: Babbitt, P]]
-	[[Category: Bain, K T.]]	+	[[Category: Bain, K T]]
-	[[Category: Boice, A.]]	+	[[Category: Boice, A]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Dickey, M.]]	+	[[Category: Dickey, M]]
-	[[Category: Emtage, S.]]	+	[[Category: Emtage, S]]
-	[[Category: Gerlt, J A.]]	+	[[Category: Gerlt, J A]]
-	[[Category: Gheyi, T.]]	+	[[Category: Gheyi, T]]
-	[[Category: Groshong, C.]]	+	[[Category: Groshong, C]]
-	[[Category: Malashkevich, V N.]]	+	[[Category: Malashkevich, V N]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Ozyurt, S.]]	+	[[Category: Ozyurt, S]]
-	[[Category: Pieper, U.]]	+	[[Category: Pieper, U]]
-	[[Category: Powell, A.]]	+	[[Category: Powell, A]]
-	[[Category: Reyes, C.]]	+	[[Category: Reyes, C]]
-	[[Category: Rooney, I.]]	+	[[Category: Rooney, I]]
-	[[Category: Rutter, M E.]]	+	[[Category: Rutter, M E]]
-	[[Category: Sali, A.]]	+	[[Category: Sali, A]]
-	[[Category: Sauder, J M.]]	+	[[Category: Sauder, J M]]
-	[[Category: Schwinn, K D.]]	+	[[Category: Schwinn, K D]]
-	[[Category: Thompson, D A.]]	+	[[Category: Thompson, D A]]
-	[[Category: Wasserman, S R.]]	+	[[Category: Wasserman, S R]]
	[[Category: Enolase]]		[[Category: Enolase]]
	[[Category: Mandelate racemase/muconate lactonizing enzyme]]		[[Category: Mandelate racemase/muconate lactonizing enzyme]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+
	[[Category: Octamer]]		[[Category: Octamer]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Tim-barrel]]		[[Category: Tim-barrel]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 09:32, 30 September 2014

OCA — Tue, 30 Sep 2014 09:32:56 GMT

←Older revision		Revision as of 09:32, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2gge.png\|left\|200px]]~~	+	==Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A==
-		+	<StructureSection load='2gge' size='340' side='right' caption='[[2gge]], [[Resolution\|resolution]] 1.89Å' scene=''>
-	~~{{STRUCTURE_2gge\| PDB=2gge \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GGE FirstGlance]. <br>
-	===Crystal Structure of Mandelate Racemase/Muconate Lactonizing Enzyme from Bacillus Subtilis complexed with MG++ at 1.8 A===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gdq\|2gdq]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YITF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gge FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gge OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gge RCSB], [http://www.ebi.ac.uk/pdbsum/2gge PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2gge TOPSAN]</span></td></tr>
-	[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/2gge_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Adams, J M.]]		[[Category: Adams, J M.]]

OCA: Protected "2gge" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 14:27:15 GMT

Protected "2gge" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:27, 7 January 2013

OCA at 14:27, 7 January 2013

OCA — Mon, 07 Jan 2013 14:27:09 GMT

←Older revision		Revision as of 14:27, 7 January 2013
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-	{{Seed}}
	[[Image:2gge.png\|left\|200px]]		[[Image:2gge.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2gge", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2gge\| PDB=2gge \| SCENE= }}		{{STRUCTURE_2gge\| PDB=2gge \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2GGE~~ is a 8 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA].	+	[[2gge]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GGE OCA].
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Adams, J M.]]		[[Category: Adams, J M.]]
Line 29:		Line 22:
	[[Category: Groshong, C.]]		[[Category: Groshong, C.]]
	[[Category: Malashkevich, V N.]]		[[Category: Malashkevich, V N.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Ozyurt, S.]]		[[Category: Ozyurt, S.]]
	[[Category: Pieper, U.]]		[[Category: Pieper, U.]]
Line 41:		Line 34:
	[[Category: Thompson, D A.]]		[[Category: Thompson, D A.]]
	[[Category: Wasserman, S R.]]		[[Category: Wasserman, S R.]]
-	[[Category: ~~Consortium~~]]	+	[[Category: Enolase]]
	[[Category: Mandelate racemase/muconate lactonizing enzyme]]		[[Category: Mandelate racemase/muconate lactonizing enzyme]]
-	[[Category: New york ~~structural genomics~~ research]]	+	[[Category: New york sgx research center for structural genomic]]
-	~~[[Category: New york~~ structural ~~genomix research consortium~~]]	+
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Octamer]]		[[Category: Octamer]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
-	[[Category: Proteinstructure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	[[Category: Tim-barrel~~,enolase~~]]	+	[[Category: Tim-barrel]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 17:19:20 2008''~~	+