2gmm - Revision history

OCA at 20:40, 20 October 2021

OCA — Wed, 20 Oct 2021 20:40:54 GMT

←Older revision		Revision as of 20:40, 20 October 2021
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	<StructureSection load='2gmm' size='340' side='right'caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2gmm' size='340' side='right'caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GMM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MAN~~:~~ALPHA-D-MANNOSE~~'>~~MAN~~</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ukg\|1ukg]], [[2gme\|2gme]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [~~http~~://pdbe.org/2gmm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gmm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gmm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [https://pdbe.org/2gmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [https://www.ebi.ac.uk/pdbsum/2gmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gmm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 19:15, 11 December 2019

OCA — Wed, 11 Dec 2019 19:15:24 GMT

←Older revision		Revision as of 19:15, 11 December 2019
Line 1:		Line 1:

	==Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man==		==Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man==
-	<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>	+	<StructureSection load='2gmm' size='340' side='right'caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L]]		[[Category: Buts, L]]

OCA at 06:45, 15 February 2018

OCA — Thu, 15 Feb 2018 06:45:51 GMT

←Older revision		Revision as of 06:45, 15 February 2018
Line 3:		Line 3:
	<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bleedwood_tree Bleedwood tree~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/2gmm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/2gmm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bleedwood tree~~]]	+	[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 07:56, 18 October 2017

OCA — Wed, 18 Oct 2017 07:56:34 GMT

←Older revision		Revision as of 07:56, 18 October 2017
Line 1:		Line 1:
		+
	==Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man==		==Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man==
	<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>		<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pterocarpus_angolensis Pterocarpus angolensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bleedwood_tree Bleedwood tree]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA-D-MANNOSE~~'>~~MAN~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://pdbe.org/2gmm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://pdbe.org/2gmm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gmm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pterocarpus angolensis~~]]	+	[[Category: Bleedwood tree]]
	[[Category: Buts, L]]		[[Category: Buts, L]]
	[[Category: Garcia-Pino, A]]		[[Category: Garcia-Pino, A]]

OCA at 02:16, 7 February 2016

OCA — Sun, 07 Feb 2016 02:16:59 GMT

←Older revision		Revision as of 02:16, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gmm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:43, 9 September 2015

OCA — Wed, 09 Sep 2015 20:43:34 GMT

←Older revision		Revision as of 20:43, 9 September 2015
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	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://pdbe.org/2gmm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2gmm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:09, 16 January 2015

OCA — Fri, 16 Jan 2015 08:09:54 GMT

←Older revision		Revision as of 08:09, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
-	[[Category: Buts, L.]]	+	[[Category: Buts, L]]
-	[[Category: Garcia-Pino, A.]]	+	[[Category: Garcia-Pino, A]]
-	[[Category: Loris, R.]]	+	[[Category: Loris, R]]
-	[[Category: Wyns, L.]]	+	[[Category: Wyns, L]]
	[[Category: Beta sandwich]]		[[Category: Beta sandwich]]
	[[Category: Legume lectin]]		[[Category: Legume lectin]]

OCA at 07:51, 30 September 2014

OCA — Tue, 30 Sep 2014 07:51:25 GMT

←Older revision		Revision as of 07:51, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2gmm.~~png~~\|~~left~~\|200px]]	+	==Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man==
		+	<StructureSection load='2gmm' size='340' side='right' caption='[[2gmm]], [[Resolution\|resolution]] 2.15Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GMM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ukg\|1ukg]], [[2gme\|2gme]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gmm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gmm RCSB], [http://www.ebi.ac.uk/pdbsum/2gmm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gm/2gmm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The interplay between metal binding, carbohydrate binding activity, stability and structure of the lectin from Pterocarpus angolensis was investigated. Removal of the metals leads to a more flexible form of the protein with significantly less conformational stability. Crystal structures of this metal-free form show significant structural rearrangements, although some structural features that allow the binding of sugars are retained. We propose that substitution of an asparagine residue at the start of the C-terminal beta-strand of the legume lectin monomer hinders the trans-isomerization of the cis-peptide bond upon demetallization and constitutes an intramolecular switch governing the isomer state of the non-proline bond and ultimately the lectin phenotype.

-	~~{{STRUCTURE_2gmm\| PDB=2gmm \| SCENE= }}~~	+	Interplay between metal binding and cis/trans isomerization in legume lectins: structural and thermodynamic study of P. angolensis lectin.,Garcia-Pino A, Buts L, Wyns L, Loris R J Mol Biol. 2006 Aug 4;361(1):153-67. Epub 2006 Jun 21. PMID:16824540<ref>PMID:16824540</ref>

-	~~===Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16824540}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2gmm]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016824540<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L.]]		[[Category: Buts, L.]]

OCA: Protected "2gmm" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 10:23:56 GMT

Protected "2gmm" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:23, 7 January 2013

OCA at 10:23, 7 January 2013

OCA — Mon, 07 Jan 2013 10:23:52 GMT

←Older revision		Revision as of 10:23, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2gmm.png\|left\|200px]]		[[Image:2gmm.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2gmm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_2gmm\| PDB=2gmm \| SCENE= }}		{{STRUCTURE_2gmm\| PDB=2gmm \| SCENE= }}

	===Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man===		===Metal-free (apo) P. angolensis seed lectin in complex with Man-alpha(1-2)Man===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16824540}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16824540 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16824540}}		{{ABSTRACT_PUBMED_16824540}}

	==About this Structure==		==About this Structure==
-	~~2GMM~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA].	+	[[2gmm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pterocarpus_angolensis Pterocarpus angolensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GMM OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16824540~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016824540</ref><references group="xtra"/>
	[[Category: Pterocarpus angolensis]]		[[Category: Pterocarpus angolensis]]
	[[Category: Buts, L.]]		[[Category: Buts, L.]]
Line 33:		Line 21:
	[[Category: Man2man]]		[[Category: Man2man]]
	[[Category: Metal-free lectin]]		[[Category: Metal-free lectin]]
		+	[[Category: Sugar binding protein]]
	[[Category: Sugar complex]]		[[Category: Sugar complex]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 10:14:35 2009''