2grz - Revision history

OCA at 09:46, 30 August 2023

OCA — Wed, 30 Aug 2023 09:46:22 GMT

←Older revision		Revision as of 09:46, 30 August 2023
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	<StructureSection load='2grz' size='340' side='right'caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2grz' size='340' side='right'caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anadara_inaequivalvis Anadara inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2grf\|2grf]]~~, ~~[[2grh\|2grh]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [https://pdbe.org/2grz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [https://www.ebi.ac.uk/pdbsum/2grz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [https://pdbe.org/2grz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [https://www.ebi.ac.uk/pdbsum/2grz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GLB1_ANAIN GLB1_ANAIN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Anadara inaequivalvis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Knapp~~, J E~~]]	+	[[Category: Knapp JE]]
-	[[Category: Pahl, R]]	+	[[Category: Pahl R]]
-	[[Category: Royer~~, W E~~]]	+	[[Category: Royer Jr WE]]
-	[[Category: Srajer, V]]	+	[[Category: Srajer V]]
-	~~[[Category: Allostery]]~~	+
-	~~[[Category: Laue]]~~	+
-	~~[[Category: Oxygen storage-transport complex]]~~	+
-	~~[[Category: Oxygen transport]]~~	+
-	~~[[Category: Time-resolved crystallography~~]]	+

OCA at 17:36, 20 October 2021

OCA — Wed, 20 Oct 2021 17:36:16 GMT

←Older revision		Revision as of 17:36, 20 October 2021
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	<StructureSection load='2grz' size='340' side='right'caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2grz' size='340' side='right'caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure ~~with sequence from [https://en.wikipedia.org/wiki/Anain Anain]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2grf\|2grf]], [[2grh\|2grh]]</div></td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2grf\|2grf]], [[2grh\|2grh]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [https://pdbe.org/2grz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [https://www.ebi.ac.uk/pdbsum/2grz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [https://pdbe.org/2grz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [https://www.ebi.ac.uk/pdbsum/2grz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>
	</table>		</table>
Line 32:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anain]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Knapp, J E]]		[[Category: Knapp, J E]]

OCA at 19:15, 10 March 2021

OCA — Wed, 10 Mar 2021 19:15:18 GMT

←Older revision		Revision as of 19:15, 10 March 2021
Line 1:		Line 1:

	==5ns Photoproduct of the M37V mutant of Scapharca HbI==		==5ns Photoproduct of the M37V mutant of Scapharca HbI==
-	<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='2grz' size='340' side='right'caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Anain Anain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anain Anain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2grf\|2grf]], [[2grh\|2grh]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [~~http~~://pdbe.org/2grz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2grz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [https://pdbe.org/2grz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [https://www.ebi.ac.uk/pdbsum/2grz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/2grz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/2grz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Anain]]		[[Category: Anain]]
		+	[[Category: Large Structures]]
	[[Category: Knapp, J E]]		[[Category: Knapp, J E]]
	[[Category: Pahl, R]]		[[Category: Pahl, R]]

OCA at 07:59, 18 October 2017

OCA — Wed, 18 Oct 2017 07:59:18 GMT

←Older revision		Revision as of 07:59, 18 October 2017
Line 1:		Line 1:
		+
	==5ns Photoproduct of the M37V mutant of Scapharca HbI==		==5ns Photoproduct of the M37V mutant of Scapharca HbI==
	<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://pdbe.org/2grz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://pdbe.org/2grz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2grz ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 04:48, 8 February 2016

OCA — Mon, 08 Feb 2016 04:48:56 GMT

←Older revision		Revision as of 04:48, 8 February 2016
Line 6:		Line 6:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://pdbe.org/2grz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2grz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2grz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:08, 9 September 2015

OCA — Wed, 09 Sep 2015 05:08:18 GMT

←Older revision		Revision as of 05:08, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Scapharca_inaequivalvis Scapharca inaequivalvis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anain Anain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ~~Scapharca inaequivalvis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 ANAIN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>
	</table>		</table>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Scapharca inaequivalvis~~]]	+	[[Category: Anain]]
	[[Category: Knapp, J E]]		[[Category: Knapp, J E]]
	[[Category: Pahl, R]]		[[Category: Pahl, R]]

OCA at 09:21, 16 January 2015

OCA — Fri, 16 Jan 2015 09:21:48 GMT

←Older revision		Revision as of 09:21, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 Scapharca inaequivalvis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 Scapharca inaequivalvis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Scapharca inaequivalvis]]		[[Category: Scapharca inaequivalvis]]
-	[[Category: Knapp, J E.]]	+	[[Category: Knapp, J E]]
-	[[Category: Pahl, R.]]	+	[[Category: Pahl, R]]
-	[[Category: Royer, W E.]]	+	[[Category: Royer, W E]]
-	[[Category: Srajer, V.]]	+	[[Category: Srajer, V]]
	[[Category: Allostery]]		[[Category: Allostery]]
	[[Category: Laue]]		[[Category: Laue]]

OCA at 08:58, 30 September 2014

OCA — Tue, 30 Sep 2014 08:58:27 GMT

←Older revision		Revision as of 08:58, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2grz.~~png~~\|~~left~~\|200px]]	+	==5ns Photoproduct of the M37V mutant of Scapharca HbI==
		+	<StructureSection load='2grz' size='340' side='right' caption='[[2grz]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GRZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2grf\|2grf]], [[2grh\|2grh]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HbI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6561 Scapharca inaequivalvis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2grz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2grz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2grz RCSB], [http://www.ebi.ac.uk/pdbsum/2grz PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gr/2grz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein allostery provides mechanisms for regulation of biological function at the molecular level. We present here an investigation of global, ligand-induced allosteric transition in a protein by time-resolved x-ray diffraction. The study provides a view of structural changes in single crystals of Scapharca dimeric hemoglobin as they proceed in real time, from 5 ns to 80 micros after ligand photodissociation. A tertiary intermediate structure forms rapidly (<5 ns) as the protein responds to the presence of an unliganded heme within each R-state protein subunit, with key structural changes observed in the heme groups, neighboring residues, and interface water molecules. This intermediate lays a foundation for the concerted tertiary and quaternary structural changes that occur on a microsecond time scale and are associated with the transition to a low-affinity T-state structure. Reversal of these changes shows a considerable lag as a T-like structure persists well after ligand rebinding, suggesting a slow T-to-R transition.

-	~~{{STRUCTURE_2grz\| PDB=2grz \| SCENE= }}~~	+	Allosteric action in real time: time-resolved crystallographic studies of a cooperative dimeric hemoglobin.,Knapp JE, Pahl R, Srajer V, Royer WE Jr Proc Natl Acad Sci U S A. 2006 May 16;103(20):7649-54. Epub 2006 May 9. PMID:16684887<ref>PMID:16684887</ref>

-	~~===5ns Photoproduct~~ of the ~~M37V mutant of Scapharca HbI===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16684887}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2grz]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016684887<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Scapharca inaequivalvis]]		[[Category: Scapharca inaequivalvis]]
	[[Category: Knapp, J E.]]		[[Category: Knapp, J E.]]

OCA: Protected "2grz" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:54:42 GMT

Protected "2grz" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:54, 7 January 2013

OCA at 13:54, 7 January 2013

OCA — Mon, 07 Jan 2013 13:54:38 GMT

←Older revision		Revision as of 13:54, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2grz.png\|left\|200px]]		[[Image:2grz.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2grz", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2grz\| PDB=2grz \| SCENE= }}		{{STRUCTURE_2grz\| PDB=2grz \| SCENE= }}

	===5ns Photoproduct of the M37V mutant of Scapharca HbI===		===5ns Photoproduct of the M37V mutant of Scapharca HbI===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16684887}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16684887 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16684887}}		{{ABSTRACT_PUBMED_16684887}}

	==About this Structure==		==About this Structure==
-	~~2GRZ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA].	+	[[2grz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Scapharca_inaequivalvis Scapharca inaequivalvis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GRZ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16684887~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016684887</ref><references group="xtra"/>
	[[Category: Scapharca inaequivalvis]]		[[Category: Scapharca inaequivalvis]]
-	[[Category: Jr., W E.Royer.]]
	[[Category: Knapp, J E.]]		[[Category: Knapp, J E.]]
	[[Category: Pahl, R.]]		[[Category: Pahl, R.]]
		+	[[Category: Royer, W E.]]
	[[Category: Srajer, V.]]		[[Category: Srajer, V.]]
	[[Category: Allostery]]		[[Category: Allostery]]
	[[Category: Laue]]		[[Category: Laue]]
		+	[[Category: Oxygen storage-transport complex]]
	[[Category: Oxygen transport]]		[[Category: Oxygen transport]]
	[[Category: Time-resolved crystallography]]		[[Category: Time-resolved crystallography]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:55:12 2009''