2hfd - Revision history

OCA at 06:40, 1 May 2024

OCA — Wed, 01 May 2024 06:40:45 GMT

←Older revision		Revision as of 06:40, 1 May 2024
Line 1:		Line 1:

	==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==		==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==
-	<StructureSection load='2hfd' size='340' side='right'caption='[[2hfd~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2hfd' size='340' side='right'caption='[[2hfd]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HFD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>hyaE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [https://pdbe.org/2hfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [https://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfd ProSAT], [https://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [https://pdbe.org/2hfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [https://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfd ProSAT], [https://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/HYAE_ECOLI HYAE_ECOLI]] Not known. Could form, along with HyaD, a complex involved in the processing of the hydrogenase 1 structural operon.	+	[https://www.uniprot.org/uniprot/HYAE_ECOLI HYAE_ECOLI] Not known. Could form, along with HyaD, a complex involved in the processing of the hydrogenase 1 structural operon.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hfd ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hfd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The structure of the 142-residue protein Q8ZP25_SALTY encoded in the genome of Salmonella typhimurium LT2 was determined independently by NMR and X-ray crystallography, and the structure of the 140-residue protein HYAE_ECOLI encoded in the genome of Escherichia coli was determined by NMR. The two proteins belong to Pfam (Finn et al. 34:D247-D251, 2006) PF07449, which currently comprises 50 members, and belongs itself to the 'thioredoxin-like clan'. However, protein HYAE_ECOLI and the other proteins of Pfam PF07449 do not contain the canonical Cys-X-X-Cys active site sequence motif of thioredoxin. Protein HYAE_ECOLI was previously classified as a [NiFe] hydrogenase-1 specific chaperone interacting with the twin-arginine translocation (Tat) signal peptide. The structures presented here exhibit the expected thioredoxin-like fold and support the view that members of Pfam family PF07449 specifically interact with Tat signal peptides.
-
-	Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.,Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T J Struct Funct Genomics. 2008 Dec;9(1-4):41-9. Epub 2008 Nov 26. PMID:19039680<ref>PMID:19039680</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2hfd" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Acton, T]]	+	[[Category: Acton T]]
-	[[Category: Atreya~~, H S~~]]	+	[[Category: Atreya HS]]
-	[[Category: Baran, M]]	+	[[Category: Baran M]]
-	[[Category: Cunningham, K]]	+	[[Category: Cunningham K]]
-	[[Category: Eletsky, A]]	+	[[Category: Eletsky A]]
-	[[Category: Janjua, H]]	+	[[Category: Janjua H]]
-	[[Category: Liu, G]]	+	[[Category: Liu G]]
-	[[Category: Liu, J]]	+	[[Category: Liu J]]
-	[[Category: Ma~~, L C~~]]	+	[[Category: Ma LC]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Parish D]]
-	[[Category: Parish, D]]	+	[[Category: Rost B]]
-	[[Category: Rost, B]]	+	[[Category: Singarapu KK]]
-	[[Category: Singarapu~~, K K~~]]	+	[[Category: Swapna GVT]]
-	[[Category: Swapna~~, G V.T~~]]	+	[[Category: Szyperski T]]
-	[[Category: Szyperski, T]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+	[[Category: Xu D]]
-	[[Category: Xu, D]]	+
-	~~[[Category: Alfa-beta]]~~	+
-	~~[[Category: Nesgc]]~~	+
-	~~[[Category: Protein structure]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:38, 17 March 2021

OCA — Wed, 17 Mar 2021 07:38:54 GMT

←Older revision		Revision as of 07:38, 17 March 2021
Line 1:		Line 1:

	==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==		==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==
-	<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2hfd' size='340' side='right'caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2HFD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [~~http~~://pdbe.org/2hfd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfd ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [https://pdbe.org/2hfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [https://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfd ProSAT], [https://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/HYAE_ECOLI HYAE_ECOLI]] Not known. Could form, along with HyaD, a complex involved in the processing of the hydrogenase 1 structural operon.	+	[[https://www.uniprot.org/uniprot/HYAE_ECOLI HYAE_ECOLI]] Not known. Could form, along with HyaD, a complex involved in the processing of the hydrogenase 1 structural operon.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T]]		[[Category: Acton, T]]
	[[Category: Atreya, H S]]		[[Category: Atreya, H S]]

OCA at 06:38, 31 January 2018

OCA — Wed, 31 Jan 2018 06:38:24 GMT

←Older revision		Revision as of 06:38, 31 January 2018
Line 1:		Line 1:
		+
	==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==		==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==
	<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://pdbe.org/2hfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://pdbe.org/2hfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2hfd ProSAT], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/2hfd_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/2hfd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hfd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:43, 11 September 2015

OCA — Fri, 11 Sep 2015 14:43:43 GMT

←Older revision		Revision as of 14:43, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://pdbe.org/2hfd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2hfd" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Acton, T]]		[[Category: Acton, T]]
	[[Category: Atreya, H S]]		[[Category: Atreya, H S]]

OCA at 17:53, 25 December 2014

OCA — Thu, 25 Dec 2014 17:53:59 GMT

←Older revision		Revision as of 17:53, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>		<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HYAE_ECOLI HYAE_ECOLI]] Not known. Could form, along with HyaD, a complex involved in the processing of the hydrogenase 1 structural operon.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Acton, T.]]	+	[[Category: Acton, T]]
-	[[Category: Atreya, H S.]]	+	[[Category: Atreya, H S]]
-	[[Category: Baran, M.]]	+	[[Category: Baran, M]]
-	[[Category: Cunningham, K.]]	+	[[Category: Cunningham, K]]
-	[[Category: Eletsky, A.]]	+	[[Category: Eletsky, A]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Liu, G.]]	+	[[Category: Liu, G]]
-	[[Category: Liu, J.]]	+	[[Category: Liu, J]]
-	[[Category: Ma, L C.]]	+	[[Category: Ma, L C]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Parish, D.]]	+	[[Category: Parish, D]]
-	[[Category: Rost, B.]]	+	[[Category: Rost, B]]
-	[[Category: Singarapu, K K.]]	+	[[Category: Singarapu, K K]]
-	[[Category: Swapna, G V.T.]]	+	[[Category: Swapna, G V.T]]
-	[[Category: Szyperski, T.]]	+	[[Category: Szyperski, T]]
	[[Category: Xiao, R]]		[[Category: Xiao, R]]
-	[[Category: Xu, D.]]	+	[[Category: Xu, D]]
	[[Category: Alfa-beta]]		[[Category: Alfa-beta]]
	[[Category: Nesgc]]		[[Category: Nesgc]]
-	[[Category: Northeast structural genomics consortium]]
	[[Category: Protein structure]]		[[Category: Protein structure]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 08:54, 30 September 2014

OCA — Tue, 30 Sep 2014 08:54:37 GMT

←Older revision		Revision as of 08:54, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2hfd.~~png\|left~~\|200px]]	+	==NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415==
		+	<StructureSection load='2hfd' size='340' side='right' caption='[[2hfd]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HFD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hyaE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hfd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hfd RCSB], [http://www.ebi.ac.uk/pdbsum/2hfd PDBsum], [http://www.topsan.org/Proteins/NESGC/2hfd TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/2hfd_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the 142-residue protein Q8ZP25_SALTY encoded in the genome of Salmonella typhimurium LT2 was determined independently by NMR and X-ray crystallography, and the structure of the 140-residue protein HYAE_ECOLI encoded in the genome of Escherichia coli was determined by NMR. The two proteins belong to Pfam (Finn et al. 34:D247-D251, 2006) PF07449, which currently comprises 50 members, and belongs itself to the 'thioredoxin-like clan'. However, protein HYAE_ECOLI and the other proteins of Pfam PF07449 do not contain the canonical Cys-X-X-Cys active site sequence motif of thioredoxin. Protein HYAE_ECOLI was previously classified as a [NiFe] hydrogenase-1 specific chaperone interacting with the twin-arginine translocation (Tat) signal peptide. The structures presented here exhibit the expected thioredoxin-like fold and support the view that members of Pfam family PF07449 specifically interact with Tat signal peptides.

-	~~{{STRUCTURE_2hfd\| PDB=2hfd \| SCENE= }}~~	+	Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.,Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T J Struct Funct Genomics. 2008 Dec;9(1-4):41-9. Epub 2008 Nov 26. PMID:19039680<ref>PMID:19039680</ref>

-	~~===NMR structure~~ of ~~protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19039680}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2hfd]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Escherichia_coli Escherichia coli]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019039680<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Acton, T.]]		[[Category: Acton, T.]]

OCA: Protected "2hfd" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:50:48 GMT

Protected "2hfd" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:50, 7 January 2013

OCA at 13:50, 7 January 2013

OCA — Mon, 07 Jan 2013 13:50:45 GMT

←Older revision		Revision as of 13:50, 7 January 2013
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-	{{Seed}}
	[[Image:2hfd.png\|left\|200px]]		[[Image:2hfd.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2hfd", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2hfd\| PDB=2hfd \| SCENE= }}		{{STRUCTURE_2hfd\| PDB=2hfd \| SCENE= }}

	===NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415===		===NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19039680}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19039680 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19039680}}		{{ABSTRACT_PUBMED_19039680}}

	==About this Structure==		==About this Structure==
-	~~2HFD~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].	+	[[2hfd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19039680~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019039680</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Acton, T.]]		[[Category: Acton, T.]]
Line 51:		Line 39:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 21:51:51 2009''

OCA at 18:47, 10 June 2009

OCA — Wed, 10 Jun 2009 18:47:41 GMT

←Older revision		Revision as of 18:47, 10 June 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2HFD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].	+	2HFD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].

	==Reference==		==Reference==
Line 52:		Line 52:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Feb 18 00~~:46:05 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 10 21:51:51 2009''

OCA at 22:46, 17 February 2009

OCA — Tue, 17 Feb 2009 22:46:06 GMT

←Older revision		Revision as of 22:46, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2HFD is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].	+	2HFD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HFD OCA].

	==Reference==		==Reference==
-	Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif., Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T, J Struct Funct Genomics. 2008 Dec;9(1-4):41-9. Epub 2008 Nov 26. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/19039680 19039680]~~	+	<ref group="xtra">PMID:19039680</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: ~~Single protein~~]]	+	[[Category: Acton, T.]]
-	[[Category: ~~Pdbx_ordinal=~~, ~~<PDBx~~:~~audit_author~~.]]	+	[[Category: Atreya, H S.]]
		+	[[Category: Baran, M.]]
		+	[[Category: Cunningham, K.]]
		+	[[Category: Eletsky, A.]]
		+	[[Category: Janjua, H.]]
		+	[[Category: Liu, G.]]
		+	[[Category: Liu, J.]]
		+	[[Category: Ma, L C.]]
		+	[[Category: Montelione, G T.]]
		+	[[Category: NESG, Northeast Structural Genomics Consortium.]]
		+	[[Category: Parish, D.]]
		+	[[Category: Rost, B.]]
		+	[[Category: Singarapu, K K.]]
		+	[[Category: Swapna, G V.T.]]
		+	[[Category: Szyperski, T.]]
		+	[[Category: Xiao, R]]
		+	[[Category: Xu, D.]]
	[[Category: Alfa-beta]]		[[Category: Alfa-beta]]
	[[Category: Nesgc]]		[[Category: Nesgc]]
Line 36:		Line 52:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 21 20~~:30:03 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:46:05 2009''