2hto - Revision history

OCA at 13:52, 13 March 2024

OCA — Wed, 13 Mar 2024 13:52:34 GMT

←Older revision		Revision as of 13:52, 13 March 2024
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [https://pdbe.org/2hto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [https://www.ebi.ac.uk/pdbsum/2hto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [https://pdbe.org/2hto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [https://www.ebi.ac.uk/pdbsum/2hto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The hexamer duplex d(CGCGCA).d(TGCGCG) was crystallized with hexammineruthenium(III) ions in an orthorhombic space group; the crystals diffracted to 1.54 A resolution. Strong ion interactions with the adenine base induce a tautomeric shift from the amino to the imino form. Consequently, the A.T base pairing is disrupted. This structural study may be relevant to metal toxicity.
-
-	Hexammineruthenium(III) ion interactions with Z-DNA.,Bharanidharan D, Thiyagarajan S, Gautham N Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt, 12):1008-13. Epub 2007 Nov 21. PMID:18084080<ref>PMID:18084080</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2hto" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Z-DNA\|Z-DNA]]		*[[Z-DNA\|Z-DNA]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 08:48, 11 October 2023

OCA — Wed, 11 Oct 2023 08:48:32 GMT

←Older revision		Revision as of 08:48, 11 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HTO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HTO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.54Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2htt\|2htt]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [https://pdbe.org/2hto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [https://www.ebi.ac.uk/pdbsum/2hto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [https://pdbe.org/2hto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [https://www.ebi.ac.uk/pdbsum/2hto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>
	</table>		</table>
Line 25:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bharanidharan, D]]	+	[[Category: Bharanidharan D]]
-	[[Category: Gautham, N]]	+	[[Category: Gautham N]]
-	[[Category: Thiyagarajan, S]]	+	[[Category: Thiyagarajan S]]
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Double helix]]~~	+
-	~~[[Category: Z-dna~~]]	+

OCA at 11:12, 5 January 2022

OCA — Wed, 05 Jan 2022 11:12:57 GMT

←Older revision		Revision as of 11:12, 5 January 2022
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	<StructureSection load='2hto' size='340' side='right'caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='2hto' size='340' side='right'caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2HTO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HTO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2htt\|2htt]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [~~http~~://pdbe.org/2hto PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2hto PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [https://pdbe.org/2hto PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [https://www.ebi.ac.uk/pdbsum/2hto PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:15, 1 April 2020

OCA — Wed, 01 Apr 2020 10:15:16 GMT

←Older revision		Revision as of 10:15, 1 April 2020
Line 1:		Line 1:

	==Ruthenium hexammine ion interactions with Z-DNA==		==Ruthenium hexammine ion interactions with Z-DNA==
-	<StructureSection load='2hto' size='340' side='right' caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>	+	<StructureSection load='2hto' size='340' side='right'caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HTO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HTO FirstGlance]. <br>
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Bharanidharan, D]]		[[Category: Bharanidharan, D]]
	[[Category: Gautham, N]]		[[Category: Gautham, N]]

OCA at 06:48, 27 June 2018

OCA — Wed, 27 Jun 2018 06:48:27 GMT

←Older revision		Revision as of 06:48, 27 June 2018
Line 1:		Line 1:
		+
	==Ruthenium hexammine ion interactions with Z-DNA==		==Ruthenium hexammine ion interactions with Z-DNA==
	<StructureSection load='2hto' size='340' side='right' caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='2hto' size='340' side='right' caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [http://pdbe.org/2hto PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [http://www.ebi.ac.uk/pdbsum/2hto PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [http://pdbe.org/2hto PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [http://www.ebi.ac.uk/pdbsum/2hto PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2hto ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 2hto" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2hto" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Z-DNA\|Z-DNA]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:08, 10 September 2015

OCA — Thu, 10 Sep 2015 12:08:29 GMT

←Older revision		Revision as of 12:08, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [http://www.ebi.ac.uk/pdbsum/2hto PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [http://pdbe.org/2hto PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [http://www.ebi.ac.uk/pdbsum/2hto PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2hto" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:36, 16 January 2015

OCA — Fri, 16 Jan 2015 08:36:56 GMT

←Older revision		Revision as of 08:36, 16 January 2015
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bharanidharan, D.]]	+	[[Category: Bharanidharan, D]]
-	[[Category: Gautham, N.]]	+	[[Category: Gautham, N]]
-	[[Category: Thiyagarajan, S.]]	+	[[Category: Thiyagarajan, S]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Double helix]]		[[Category: Double helix]]
	[[Category: Z-dna]]		[[Category: Z-dna]]

OCA at 15:35, 12 October 2014

OCA — Sun, 12 Oct 2014 15:35:24 GMT

←Older revision		Revision as of 15:35, 12 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2hto.~~png~~\|~~left~~\|~~200px~~]]	+	==Ruthenium hexammine ion interactions with Z-DNA==
		+	<StructureSection load='2hto' size='340' side='right' caption='[[2hto]], [[Resolution\|resolution]] 1.54Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HTO FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NRU:RUTHENIUM+(III)+HEXAAMINE+ION'>NRU</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2htt\|2htt]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hto FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hto OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2hto RCSB], [http://www.ebi.ac.uk/pdbsum/2hto PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The hexamer duplex d(CGCGCA).d(TGCGCG) was crystallized with hexammineruthenium(III) ions in an orthorhombic space group; the crystals diffracted to 1.54 A resolution. Strong ion interactions with the adenine base induce a tautomeric shift from the amino to the imino form. Consequently, the A.T base pairing is disrupted. This structural study may be relevant to metal toxicity.

-	~~{{STRUCTURE_2hto\| PDB=2hto \| SCENE= }}~~	+	Hexammineruthenium(III) ion interactions with Z-DNA.,Bharanidharan D, Thiyagarajan S, Gautham N Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt, 12):1008-13. Epub 2007 Nov 21. PMID:18084080<ref>PMID:18084080</ref>

-	~~===Ruthenium hexammine ion interactions with Z-DNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18084080}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http:~~//~~oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA].~~	+	</StructureSection>
	[[Category: Bharanidharan, D.]]		[[Category: Bharanidharan, D.]]
	[[Category: Gautham, N.]]		[[Category: Gautham, N.]]

OCA: Protected "2hto" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 11:59:36 GMT

Protected "2hto" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:59, 7 January 2013

OCA at 11:59, 7 January 2013

OCA — Mon, 07 Jan 2013 11:59:32 GMT

←Older revision		Revision as of 11:59, 7 January 2013
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-	{{Seed}}
	[[Image:2hto.png\|left\|200px]]		[[Image:2hto.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2hto", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2hto\| PDB=2hto \| SCENE= }}		{{STRUCTURE_2hto\| PDB=2hto \| SCENE= }}

	===Ruthenium hexammine ion interactions with Z-DNA===		===Ruthenium hexammine ion interactions with Z-DNA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18084080}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18084080 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18084080}}		{{ABSTRACT_PUBMED_18084080}}

	==About this Structure==		==About this Structure==
-	~~2HTO is a~~ [[~~Protein complex~~]] structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA].	+	[[2hto]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HTO OCA].
-		+
-	~~==Reference==~~	+
-	Hexammineruthenium(III) ion interactions with Z-DNA., Bharanidharan D, Thiyagarajan S, Gautham N, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Dec 1;63(Pt, 12):1008-13. Epub 2007 Nov 21. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18084080 18084080]	+
-	~~[[Category: Protein complex]]~~	+
	[[Category: Bharanidharan, D.]]		[[Category: Bharanidharan, D.]]
	[[Category: Gautham, N.]]		[[Category: Gautham, N.]]
	[[Category: Thiyagarajan, S.]]		[[Category: Thiyagarajan, S.]]
		+	[[Category: Dna]]
	[[Category: Double helix]]		[[Category: Double helix]]
	[[Category: Z-dna]]		[[Category: Z-dna]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 8 09:06:05 2008''