2ij9 - Revision history

OCA at 10:12, 30 August 2023

OCA — Wed, 30 Aug 2023 10:12:14 GMT

←Older revision		Revision as of 10:12, 30 August 2023
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	<StructureSection load='2ij9' size='340' side='right'caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2ij9' size='340' side='right'caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Arcfu Arcfu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.9Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~pyrH, AF_2042 ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [https://pdbe.org/2ij9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [https://pdbe.org/2ij9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PYRH_ARCFU PYRH_ARCFU]] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).	+	[https://www.uniprot.org/uniprot/PYRH_ARCFU PYRH_ARCFU] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arcfu~~]]	+	[[Category: Archaeoglobus fulgidus DSM 4304]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Adams~~, J M~~]]	+	[[Category: Adams JM]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Chen, R]]	+	[[Category: Chen R]]
-	[[Category: Dickey, M]]	+	[[Category: Dickey M]]
-	[[Category: Keefe~~, L J]]~~	+	[[Category: Keefe LJ]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ozyurt S]]
-	[[Category: Ozyurt, S]]	+	[[Category: Patskovsky Y]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 17:53, 20 October 2021

OCA — Wed, 20 Oct 2021 17:53:38 GMT

←Older revision		Revision as of 17:53, 20 October 2021
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	==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==		==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==
-	<StructureSection load='2ij9' size='340' side='right'caption='[[2ij9]]' scene=''>	+	<StructureSection load='2ij9' size='340' side='right'caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [https://pdbe.org/2ij9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [https://pdbe.org/2ij9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/PYRH_ARCFU PYRH_ARCFU]] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arcfu]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Adams JM]]	+	[[Category: Adams, J M]]
-	[[Category: Almo SC]]	+	[[Category: Almo, S C]]
-	[[Category: Burley SK]]	+	[[Category: Burley, S K]]
-	[[Category: Chen R]]	+	[[Category: Chen, R]]
-	[[Category: Dickey M]]	+	[[Category: Dickey, M]]
-	[[Category: Keefe LJ]]	+	[[Category: Keefe, L J]]
-	[[Category: Ozyurt S]]	+	[[Category: Structural genomic]]
-	[[Category: Patskovsky Y]]	+	[[Category: Ozyurt, S]]
-	[[Category: Sauder JM]]	+	[[Category: Patskovsky, Y]]
-	[[Category: Wasserman SR]]	+	[[Category: Sauder, J M]]
		+	[[Category: Wasserman, S R]]
		+	[[Category: Kinase]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Transferase]]

OCA at 11:17, 31 March 2021

OCA — Wed, 31 Mar 2021 11:17:14 GMT

←Older revision		Revision as of 11:17, 31 March 2021
Line 1:		Line 1:

	==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==		==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==
-	<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]]~~, [[Resolution\|resolution]] 2.90Å~~' scene=''>	+	<StructureSection load='2ij9' size='340' side='right'caption='[[2ij9]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
-	</td></tr>~~<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [https://pdbe.org/2ij9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [~~http~~://pdbe.org/2ij9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/PYRH_ARCFU PYRH_ARCFU]] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arcfu~~]]	+	[[Category: Large Structures]]
-	[[Category: Adams~~, J M~~]]	+	[[Category: Adams JM]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Chen, R]]	+	[[Category: Chen R]]
-	[[Category: Dickey, M]]	+	[[Category: Dickey M]]
-	[[Category: Keefe~~, L J]]~~	+	[[Category: Keefe LJ]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ozyurt S]]
-	[[Category: Ozyurt, S]]	+	[[Category: Patskovsky Y]]
-	[[Category: Patskovsky, Y]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Wasserman SR]]
-	[[Category: Wasserman~~, S R]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:26, 4 July 2018

OCA — Wed, 04 Jul 2018 08:26:00 GMT

←Older revision		Revision as of 08:26, 4 July 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==		==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==
	<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://pdbe.org/2ij9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://pdbe.org/2ij9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ij9 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ij/2ij9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ij/2ij9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:41, 8 February 2016

OCA — Mon, 08 Feb 2016 04:41:14 GMT

←Older revision		Revision as of 04:41, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ij9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 07:57, 10 September 2015

OCA — Thu, 10 Sep 2015 07:57:49 GMT

←Older revision		Revision as of 07:57, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ~~Archaeoglobus fulgidus DSM 4304~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://pdbe.org/2ij9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Archaeoglobus fulgidus dsm 4304~~]]	+	[[Category: Arcfu]]
	[[Category: Adams, J M]]		[[Category: Adams, J M]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 20:42, 24 December 2014

OCA — Wed, 24 Dec 2014 20:42:01 GMT

←Older revision		Revision as of 20:42, 24 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PYRH_ARCFU PYRH_ARCFU]] Catalyzes the reversible phosphorylation of UMP to UDP (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:42, 6 November 2014

OCA — Thu, 06 Nov 2014 13:42:42 GMT

←Older revision		Revision as of 13:42, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 Archaeoglobus fulgidus DSM 4304])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 Archaeoglobus fulgidus DSM 4304])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Archaeoglobus fulgidus dsm 4304]]		[[Category: Archaeoglobus fulgidus dsm 4304]]
-	[[Category: Adams, J M.]]	+	[[Category: Adams, J M]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Chen, R.]]	+	[[Category: Chen, R]]
-	[[Category: Dickey, M.]]	+	[[Category: Dickey, M]]
-	[[Category: Keefe, L J~~.]]~~	+	[[Category: Keefe, L J]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Ozyurt, S.]]~~	+
-	~~[[Category: Patskovsky, Y.]]~~	+
-	~~[[Category: Sauder, J M.]]~~	+
-	~~[[Category: Wasserman, S R.]]~~	+
-	~~[[Category: Kinase]]~~	+
-	~~[[Category: New york sgx research center for structural genomics structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Ozyurt, S]]
		+	[[Category: Patskovsky, Y]]
		+	[[Category: Sauder, J M]]
		+	[[Category: Wasserman, S R]]
		+	[[Category: Kinase]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:17, 29 September 2014

OCA — Mon, 29 Sep 2014 05:17:04 GMT

←Older revision		Revision as of 05:17, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2ij9.png\|left\|200px]]~~	+	==Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus==
-		+	<StructureSection load='2ij9' size='340' side='right' caption='[[2ij9]], [[Resolution\|resolution]] 2.90Å' scene=''>
-	~~{{STRUCTURE_2ij9\| PDB=2ij9 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IJ9 FirstGlance]. <br>
-	===Crystal Structure of Uridylate Kinase from Archaeoglobus Fulgidus===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pyrH, AF_2042 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 Archaeoglobus fulgidus DSM 4304])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ij9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ij9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ij9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ij9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ij9 TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ij/2ij9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Uridylate kinase\|Uridylate kinase]]		*[[Uridylate kinase\|Uridylate kinase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Archaeoglobus fulgidus dsm 4304]]		[[Category: Archaeoglobus fulgidus dsm 4304]]
	[[Category: Adams, J M.]]		[[Category: Adams, J M.]]

OCA at 08:56, 20 October 2012

OCA — Sat, 20 Oct 2012 08:56:52 GMT

←Older revision		Revision as of 08:56, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2ij9]] is a 2 chain structure ~~of [[Uridylate kinase]]~~ with sequence from [http://en.wikipedia.org/wiki/~~Archaeoglobus_fulgidus~~ Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA].	+	[[2ij9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IJ9 OCA].

	==See Also==		==See Also==
	*[[Uridylate kinase\|Uridylate kinase]]		*[[Uridylate kinase\|Uridylate kinase]]
-	[[Category: Archaeoglobus fulgidus]]	+	[[Category: Archaeoglobus fulgidus dsm 4304]]
	[[Category: Adams, J M.]]		[[Category: Adams, J M.]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]