2jeq - Revision history

OCA at 14:45, 13 December 2023

OCA — Wed, 13 Dec 2023 14:45:35 GMT

←Older revision		Revision as of 14:45, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2jeq' size='340' side='right'caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='2jeq' size='340' side='right'caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_pabuli"_schieblich_1923 "bacillus~~ pabuli~~" schieblich 1923~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~, ~~<scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.94Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2jep\|2jep]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>[https://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [https://pdbe.org/2jeq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [https://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [https://pdbe.org/2jeq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [https://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/H9KVH3_9BACL H9KVH3_9BACL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus pabuli schieblich 1923]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Xyloglucan-specific endo-beta-1,4-glucanase~~]]	+	[[Category: Paenibacillus pabuli]]
-	[[Category: Bjornvad~~, M E~~]]	+	[[Category: Bjornvad ME]]
-	[[Category: Borchert~~, T V~~]]	+	[[Category: Borchert TV]]
-	[[Category: Brumer, H]]	+	[[Category: Brumer H]]
-	[[Category: Danielsen, S]]	+	[[Category: Danielsen S]]
-	[[Category: Davies~~, G J~~]]	+	[[Category: Davies GJ]]
-	[[Category: Eklof~~, J M~~]]	+	[[Category: Eklof JM]]
-	[[Category: Gloster~~, T M~~]]	+	[[Category: Gloster TM]]
-	[[Category: Ibatullin~~, F M~~]]	+	[[Category: Ibatullin FM]]
-	[[Category: Johansen, K]]	+	[[Category: Johansen K]]
-	[[Category: Jorgensen~~, P L~~]]	+	[[Category: Jorgensen PL]]
-	[[Category: Macauley, K]]	+	[[Category: Macauley K]]
-	[[Category: Roberts, S]]	+	[[Category: Roberts S]]
-	[[Category: Turkenburg~~, J P~~]]	+	[[Category: Turkenburg JP]]
-	[[Category: Wilson~~, K S]]~~	+	[[Category: Wilson KS]]
-	~~[[Category: Family 5]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Plant cell wall]]~~	+
-	~~[[Category: Xyloglucanase~~]]	+

OCA at 08:09, 19 January 2022

OCA — Wed, 19 Jan 2022 08:09:10 GMT

←Older revision		Revision as of 08:09, 19 January 2022
Line 3:		Line 3:
	<StructureSection load='2jeq' size='340' side='right'caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='2jeq' size='340' side='right'caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=~~GAL~~:~~BETA-D-GALACTOSE~~'>~~GAL~~</scene>, <scene name='pdbligand=~~XYS~~:~~XYLOPYRANOSE~~'>~~XYS~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jep\|2jep]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [~~http~~://pdbe.org/2jeq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [https://pdbe.org/2jeq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [https://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 07:49, 15 April 2020

OCA — Wed, 15 Apr 2020 07:49:23 GMT

←Older revision		Revision as of 07:49, 15 April 2020
Line 1:		Line 1:

	==Family 5 xyloglucanase from Paenibacillus pabuli in complex with ligand==		==Family 5 xyloglucanase from Paenibacillus pabuli in complex with ligand==
-	<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>	+	<StructureSection load='2jeq' size='340' side='right'caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://pdbe.org/2jeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://pdbe.org/2jeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
-	*[[Glucanase\|Glucanase]]	+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus pabuli schieblich 1923]]		[[Category: Bacillus pabuli schieblich 1923]]
		+	[[Category: Large Structures]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
	[[Category: Bjornvad, M E]]		[[Category: Bjornvad, M E]]

OCA at 07:12, 11 July 2018

OCA — Wed, 11 Jul 2018 07:12:12 GMT

←Older revision		Revision as of 07:12, 11 July 2018
Line 1:		Line 1:
-	==~~FAMILY~~ 5 ~~XYLOGLUCANASE FROM PAENIBACILLUS PABULI IN COMPLEX WITH LIGAND~~==	+
		+	==Family 5 xyloglucanase from Paenibacillus pabuli in complex with ligand==
	<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=~~XYS~~:~~XYLOPYRANOSE~~'>~~XYS~~</scene>, <scene name='pdbligand=~~GAL~~:~~BETA-D-GALACTOSE~~'>~~GAL~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://pdbe.org/2jeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://pdbe.org/2jeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jeq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/2jeq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/2jeq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:33, 7 February 2016

OCA — Sun, 07 Feb 2016 21:33:48 GMT

←Older revision		Revision as of 21:33, 7 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jeq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:09, 10 September 2015

OCA — Thu, 10 Sep 2015 05:09:24 GMT

←Older revision		Revision as of 05:09, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>		<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paenibacillus_pabuli Paenibacillus~~ pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pabuli"_schieblich_1923 "bacillus pabuli" schieblich 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://pdbe.org/2jeq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jeq" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Paenibacillus~~ pabuli]]	+	[[Category: Bacillus pabuli schieblich 1923]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
	[[Category: Bjornvad, M E]]		[[Category: Bjornvad, M E]]

OCA at 15:55, 19 January 2015

OCA — Mon, 19 Jan 2015 15:55:00 GMT

←Older revision		Revision as of 15:55, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Paenibacillus pabuli]]		[[Category: Paenibacillus pabuli]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]
-	[[Category: Bjornvad, M E.]]	+	[[Category: Bjornvad, M E]]
-	[[Category: Borchert, T V.]]	+	[[Category: Borchert, T V]]
-	[[Category: Brumer, H.]]	+	[[Category: Brumer, H]]
-	[[Category: Danielsen, S.]]	+	[[Category: Danielsen, S]]
-	[[Category: Davies, G J.]]	+	[[Category: Davies, G J]]
-	[[Category: Eklof, J M.]]	+	[[Category: Eklof, J M]]
-	[[Category: Gloster, T M.]]	+	[[Category: Gloster, T M]]
-	[[Category: Ibatullin, F M.]]	+	[[Category: Ibatullin, F M]]
-	[[Category: Johansen, K.]]	+	[[Category: Johansen, K]]
-	[[Category: Jorgensen, P L.]]	+	[[Category: Jorgensen, P L]]
-	[[Category: Macauley, K.]]	+	[[Category: Macauley, K]]
-	[[Category: Roberts, S.]]	+	[[Category: Roberts, S]]
-	[[Category: Turkenburg, J P.]]	+	[[Category: Turkenburg, J P]]
-	[[Category: Wilson, K S.]]	+	[[Category: Wilson, K S]]
	[[Category: Family 5]]		[[Category: Family 5]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Plant cell wall]]		[[Category: Plant cell wall]]
	[[Category: Xyloglucanase]]		[[Category: Xyloglucanase]]

OCA at 03:12, 29 September 2014

OCA — Mon, 29 Sep 2014 03:12:08 GMT

←Older revision		Revision as of 03:12, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2jeq.~~png~~\|~~left~~\|200px]]	+	==FAMILY 5 XYLOGLUCANASE FROM PAENIBACILLUS PABULI IN COMPLEX WITH LIGAND==
		+	<StructureSection load='2jeq' size='340' side='right' caption='[[2jeq]], [[Resolution\|resolution]] 1.94Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JEQ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=XYS:XYLOPYRANOSE'>XYS</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jep\|2jep]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xyloglucan-specific_endo-beta-1,4-glucanase Xyloglucan-specific endo-beta-1,4-glucanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.151 3.2.1.151] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jeq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jeq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jeq RCSB], [http://www.ebi.ac.uk/pdbsum/2jeq PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/je/2jeq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The plant cell wall is a complex material in which the cellulose microfibrils are embedded within a mesh of other polysaccharides, some of which are loosely termed "hemicellulose." One such hemicellulose is xyloglucan, which displays a beta-1,4-linked d-glucose backbone substituted with xylose, galactose, and occasionally fucose moieties. Both xyloglucan and the enzymes responsible for its modification and degradation are finding increasing prominence, reflecting both the drive for enzymatic biomass conversion, their role in detergent applications, and the utility of modified xyloglucans for cellulose fiber modification. Here we present the enzymatic characterization and three-dimensional structures in ligand-free and xyloglucan-oligosaccharide complexed forms of two distinct xyloglucanases from glycoside hydrolase families GH5 and GH12. The enzymes, Paenibacillus pabuli XG5 and Bacillus licheniformis XG12, both display open active center grooves grafted upon their respective (beta/alpha)(8) and beta-jelly roll folds, in which the side chain decorations of xyloglucan may be accommodated. For the beta-jelly roll enzyme topology of GH12, binding of xylosyl and pendant galactosyl moieties is tolerated, but the enzyme is similarly competent in the degradation of unbranched glucans. In the case of the (beta/alpha)(8) GH5 enzyme, kinetically productive interactions are made with both xylose and galactose substituents, as reflected in both a high specific activity on xyloglucan and the kinetics of a series of aryl glycosides. The differential strategies for the accommodation of the side chains of xyloglucan presumably facilitate the action of these microbial hydrolases in milieus where diverse and differently substituted substrates may be encountered.

-	~~{{STRUCTURE_2jeq\| PDB=2jeq \| SCENE= }}~~	+	Characterization and three-dimensional structures of two distinct bacterial xyloglucanases from families GH5 and GH12.,Gloster TM, Ibatullin FM, Macauley K, Eklof JM, Roberts S, Turkenburg JP, Bjornvad ME, Jorgensen PL, Danielsen S, Johansen KS, Borchert TV, Wilson KS, Brumer H, Davies GJ J Biol Chem. 2007 Jun 29;282(26):19177-89. Epub 2007 Mar 21. PMID:17376777<ref>PMID:17376777</ref>

-	~~===FAMILY 5 XYLOGLUCANASE FROM PAENIBACILLUS PABULI IN COMPLEX WITH LIGAND===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17376777}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2jeq]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA].~~	+

	==See Also==		==See Also==
	*[[Glucanase\|Glucanase]]		*[[Glucanase\|Glucanase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017376777<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Paenibacillus pabuli]]		[[Category: Paenibacillus pabuli]]
	[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]		[[Category: Xyloglucan-specific endo-beta-1,4-glucanase]]

OCA at 07:55, 20 October 2012

OCA — Sat, 20 Oct 2012 07:55:00 GMT

←Older revision		Revision as of 07:55, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2jeq]] is a 1 chain structure ~~of [[Glucanase]]~~ with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA].	+	[[2jeq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Paenibacillus_pabuli Paenibacillus pabuli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JEQ OCA].

	==See Also==		==See Also==

OCA: Protected "2jeq" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 17:52:46 GMT

Protected "2jeq" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:52, 25 July 2012