2jir - Revision history

OCA at 14:50, 13 December 2023

OCA — Wed, 13 Dec 2023 14:50:35 GMT

←Older revision		Revision as of 14:50, 13 December 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JIR FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JIR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.35Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [https://pdbe.org/2jir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [https://www.ebi.ac.uk/pdbsum/2jir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [https://pdbe.org/2jir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [https://www.ebi.ac.uk/pdbsum/2jir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NAPA_DESDA NAPA_DESDA]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.	+	[https://www.uniprot.org/uniprot/NAPA_DESDA NAPA_DESDA] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 39:		Line 38:
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Nitrate reductase]]~~	+	[[Category: Brondino CD]]
-	[[Category: Brondino~~, C D~~]]	+	[[Category: Coelho C]]
-	[[Category: Coelho, C]]	+	[[Category: Gonzalez PJ]]
-	[[Category: Gonzalez~~, P J~~]]	+	[[Category: Moura I]]
-	[[Category: Moura, I]]	+	[[Category: Moura JJG]]
-	[[Category: Moura~~, J J.G~~]]	+	[[Category: Mukhopadhyay A]]
-	[[Category: Mukhopadhyay, A]]	+	[[Category: Najmudin S]]
-	[[Category: Najmudin, S]]	+	[[Category: Romao CC]]
-	[[Category: Romao~~, C C~~]]	+	[[Category: Romao MJ]]
-	[[Category: Romao~~, M J~~]]	+	[[Category: Trincao J]]
-	[[Category: Trincao, J]]	+
-	~~[[Category: 4fe-4s cluster]]~~	+
-	~~[[Category: Dissimilatory nitrate reductase]]~~	+
-	~~[[Category: Disulfide bond]]~~	+
-	~~[[Category: Electron paramagnetic resonance]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Iron- sulfur]]~~	+
-	~~[[Category: Iron-sulfur]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Molybdenum]]~~	+
-	~~[[Category: Molybdopterin cofactor]]~~	+
-	~~[[Category: Nitrate assimilation]]~~	+
-	~~[[Category: Nitrogenous acceptor]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Periplasmic]]~~	+
-	~~[[Category: Sulfido ligand]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 08:11, 19 January 2022

OCA — Wed, 19 Jan 2022 08:11:48 GMT

←Older revision		Revision as of 08:11, 19 January 2022
Line 3:		Line 3:
	<StructureSection load='2jir' size='340' side='right'caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2jir' size='340' side='right'caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2JIR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JIR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [~~http~~://pdbe.org/2jir PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jir PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [https://pdbe.org/2jir PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [https://www.ebi.ac.uk/pdbsum/2jir PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NAPA_DESDA NAPA_DESDA]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.	+	[[https://www.uniprot.org/uniprot/NAPA_DESDA NAPA_DESDA]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:52, 15 April 2020

OCA — Wed, 15 Apr 2020 07:52:33 GMT

←Older revision		Revision as of 07:52, 15 April 2020
Line 1:		Line 1:

	==A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand==		==A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand==
-	<StructureSection load='2jir' size='340' side='right' caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>	+	<StructureSection load='2jir' size='340' side='right'caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JIR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2JIR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://pdbe.org/2jir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://pdbe.org/2jir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
		+	[[Category: Large Structures]]
	[[Category: Nitrate reductase]]		[[Category: Nitrate reductase]]
	[[Category: Brondino, C D]]		[[Category: Brondino, C D]]

OCA at 06:36, 11 July 2018

OCA — Wed, 11 Jul 2018 06:36:48 GMT

←Older revision		Revision as of 06:36, 11 July 2018
Line 1:		Line 1:
-	==A ~~NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS~~ ATCC 27774 ~~FROM CRYSTALLOGRAPHIC AND~~ EPR ~~DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND~~==	+
		+	==A New Catalytic Mechanism of Periplasmic Nitrate Reductase from Desulfovibrio desulfuricans ATCC 27774 from Crystallographic and EPR Data and based on detailed analysis of the sixth ligand==
	<StructureSection load='2jir' size='340' side='right' caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>		<StructureSection load='2jir' size='340' side='right' caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://pdbe.org/2jir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://pdbe.org/2jir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jir ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jir_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jir_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 10:25, 7 February 2016

OCA — Sun, 07 Feb 2016 10:25:17 GMT

←Older revision		Revision as of 10:25, 7 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jir ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:37, 10 September 2015

OCA — Thu, 10 Sep 2015 00:37:46 GMT

←Older revision		Revision as of 00:37, 10 September 2015
Line 6:		Line 6:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://pdbe.org/2jir PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~NAPA_DESDE NAPA_DESDE~~]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.~~[HAMAP-Rule:MF_01630]~~	+	[[http://www.uniprot.org/uniprot/NAPA_DESDA NAPA_DESDA]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jir" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 14:23, 24 December 2014

OCA — Wed, 24 Dec 2014 14:23:48 GMT

←Older revision		Revision as of 14:23, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JIR FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JIR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NAPA_DESDE NAPA_DESDE]] Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein NapC, thus allowing electron flow between membrane and periplasm. Essential function for nitrate assimilation and may have a role in anaerobic metabolism.[HAMAP-Rule:MF_01630]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Nitrate reductase]]		[[Category: Nitrate reductase]]
-	[[Category: Brondino, C D.]]	+	[[Category: Brondino, C D]]
-	[[Category: Coelho, C.]]	+	[[Category: Coelho, C]]
-	[[Category: Gonzalez, P J.]]	+	[[Category: Gonzalez, P J]]
-	[[Category: Moura, I.]]	+	[[Category: Moura, I]]
-	[[Category: Moura, J J.G.]]	+	[[Category: Moura, J J.G]]
-	[[Category: Mukhopadhyay, A.]]	+	[[Category: Mukhopadhyay, A]]
-	[[Category: Najmudin, S.]]	+	[[Category: Najmudin, S]]
-	[[Category: Romao, C C.]]	+	[[Category: Romao, C C]]
-	[[Category: Romao, M J.]]	+	[[Category: Romao, M J]]
-	[[Category: Trincao, J.]]	+	[[Category: Trincao, J]]
	[[Category: 4fe-4s cluster]]		[[Category: 4fe-4s cluster]]
	[[Category: Dissimilatory nitrate reductase]]		[[Category: Dissimilatory nitrate reductase]]

OCA at 04:29, 29 September 2014

OCA — Mon, 29 Sep 2014 04:29:55 GMT

←Older revision		Revision as of 04:29, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2jir.~~png~~\|~~left~~\|200px]]	+	==A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND==
		+	<StructureSection load='2jir' size='340' side='right' caption='[[2jir]], [[Resolution\|resolution]] 2.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JIR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=MO:MOLYBDENUM+ATOM'>MO</scene>, <scene name='pdbligand=NO2:NITRITE+ION'>NO2</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2nap\|2nap]], [[2v3v\|2v3v]], [[2jiq\|2jiq]], [[2jim\|2jim]], [[2jio\|2jio]], [[2v45\|2v45]], [[2jip\|2jip]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrate_reductase Nitrate reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.99.4 1.7.99.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jir FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jir OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jir RCSB], [http://www.ebi.ac.uk/pdbsum/2jir PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jir_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Nitrate reductase from Desulfovibrio desulfuricans ATCC 27774 (DdNapA) is a monomeric protein of 80 kDa harboring a bis(molybdopterin guanine dinucleotide) active site and a [4Fe-4S] cluster. Previous electron paramagnetic resonance (EPR) studies in both catalytic and inhibiting conditions showed that the molybdenum center has high coordination flexibility when reacted with reducing agents, substrates or inhibitors. As-prepared DdNapA samples, as well as those reacted with substrates and inhibitors, were crystallized and the corresponding structures were solved at resolutions ranging from 1.99 to 2.45 A. The good quality of the diffraction data allowed us to perform a detailed structural study of the active site and, on that basis, the sixth molybdenum ligand, originally proposed to be an OH/OH(2) ligand, was assigned as a sulfur atom after refinement and analysis of the B factors of all the structures. This unexpected result was confirmed by a single-wavelength anomalous diffraction experiment below the iron edge (lambda = 1.77 A) of the as-purified enzyme. Furthermore, for six of the seven datasets, the S-S distance between the sulfur ligand and the Sgamma atom of the molybdenum ligand Cys(A140) was substantially shorter than the van der Waals contact distance and varies between 2.2 and 2.85 A, indicating a partial disulfide bond. Preliminary EPR studies under catalytic conditions showed an EPR signal designated as a turnover signal (g values 1.999, 1.990, 1.982) showing hyperfine structure originating from a nucleus of unknown nature. Spectropotentiometric studies show that reduced methyl viologen, the electron donor used in the catalytic reaction, does not interact directly with the redox cofactors. The turnover signal can be obtained only in the presence of the reaction substrates. With use of the optimized conditions determined by spectropotentiometric titration, the turnover signal was developed with (15)N-labeled nitrate and in D(2)O-exchanged DdNapA samples. These studies indicate that this signal is not associated with a Mo(V)-nitrate adduct and that the hyperfine structure originates from two equivalent solvent-exchangeable protons. The new coordination sphere of molybdenum proposed on the basis of our studies led us to revise the currently accepted reaction mechanism for periplasmic nitrate reductases. Proposals for a new mechanism are discussed taking into account a molybdenum and ligand-based redox chemistry, rather than the currently accepted redox chemistry based solely on the molybdenum atom.

-	~~{{STRUCTURE_2jir\| PDB=2jir \| SCENE= }}~~	+	Periplasmic nitrate reductase revisited: a sulfur atom completes the sixth coordination of the catalytic molybdenum.,Najmudin S, Gonzalez PJ, Trincao J, Coelho C, Mukhopadhyay A, Cerqueira NM, Romao CC, Moura I, Moura JJ, Brondino CD, Romao MJ J Biol Inorg Chem. 2008 Mar 8;. PMID:18327621<ref>PMID:18327621</ref>

-	~~===A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18327621}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2jir]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA].~~	+

	==See Also==		==See Also==
	*[[Nitrate reductase\|Nitrate reductase]]		*[[Nitrate reductase\|Nitrate reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018327621<~~/~~ref~~><~~ref group="xtra">PMID:016791644</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Nitrate reductase]]		[[Category: Nitrate reductase]]

OCA at 06:21, 20 October 2012

OCA — Sat, 20 Oct 2012 06:21:50 GMT

←Older revision		Revision as of 06:21, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2jir]] is a 1 chain structure ~~of [[Nitrate reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA].	+	[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA].

	==See Also==		==See Also==

OCA at 12:56, 25 July 2012

OCA — Wed, 25 Jul 2012 12:56:34 GMT

←Older revision		Revision as of 12:56, 25 July 2012
Line 1:		Line 1:
	[[Image:2jir.png\|left\|200px]]		[[Image:2jir.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2jir", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2jir\| PDB=2jir \| SCENE= }}		{{STRUCTURE_2jir\| PDB=2jir \| SCENE= }}

	===A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND===		===A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18327621}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18327621 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18327621}}		{{ABSTRACT_PUBMED_18327621}}

	==About this Structure==		==About this Structure==
-	[[2jir]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA].	+	[[2jir]] is a 1 chain structure of [[Nitrate reductase]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIR OCA].
		+
		+	==See Also==
		+	*[[Nitrate reductase\|Nitrate reductase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18327621~~</ref><ref group="xtra">PMID:~~16791644~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018327621</ref><ref group="xtra">PMID:016791644</ref><references group="xtra"/>
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Nitrate reductase]]		[[Category: Nitrate reductase]]
Line 35:		Line 27:
	[[Category: Romao, M J.]]		[[Category: Romao, M J.]]
	[[Category: Trincao, J.]]		[[Category: Trincao, J.]]
-	[[Category: 4fe-4]]
	[[Category: 4fe-4s cluster]]		[[Category: 4fe-4s cluster]]
	[[Category: Dissimilatory nitrate reductase]]		[[Category: Dissimilatory nitrate reductase]]