2jtm - Revision history

OCA at 05:35, 15 May 2024

OCA — Wed, 15 May 2024 05:35:47 GMT

←Older revision		Revision as of 05:35, 15 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:36, 14 June 2023

OCA — Wed, 14 Jun 2023 08:36:59 GMT

←Older revision		Revision as of 08:36, 14 June 2023
Line 1:		Line 1:

	==Solution structure of Sso6901 from Sulfolobus solfataricus P2==		==Solution structure of Sso6901 from Sulfolobus solfataricus P2==
-	<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35091 Atcc 35091~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~CREN7_SULSO CREN7_SULSO]~~] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>	+	[https://www.uniprot.org/uniprot/CREN7_SACS2 CREN7_SACS2] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35091]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Feng, Y]]	+	[[Category: Saccharolobus solfataricus]]
-	[[Category: Guo, L]]	+	[[Category: Feng Y]]
-	[[Category: Huang, L]]	+	[[Category: Guo L]]
-	[[Category: Wang, J]]	+	[[Category: Huang L]]
-	~~[[Category: Dna binding protein]]~~	+	[[Category: Wang J]]
-	~~[[Category: Sh3-like~~]]	+

OCA at 07:03, 1 December 2021

OCA — Wed, 01 Dec 2021 07:03:48 GMT

←Older revision		Revision as of 07:03, 1 December 2021
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	<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [~~http~~://pdbe.org/2jtm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [https://pdbe.org/2jtm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [https://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CREN7_SULSO CREN7_SULSO]] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>	+	[[https://www.uniprot.org/uniprot/CREN7_SULSO CREN7_SULSO]] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:32, 26 February 2020

OCA — Wed, 26 Feb 2020 09:32:57 GMT

←Older revision		Revision as of 09:32, 26 February 2020
Line 1:		Line 1:

	==Solution structure of Sso6901 from Sulfolobus solfataricus P2==		==Solution structure of Sso6901 from Sulfolobus solfataricus P2==
-	<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2jtm' size='340' side='right'caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~'saccharolobus_solfataricus' 'saccharolobus solfataricus'~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://pdbe.org/2jtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://pdbe.org/2jtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
	</table>		</table>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharolobus solfataricus~~]]	+	[[Category: Atcc 35091]]
		+	[[Category: Large Structures]]
	[[Category: Feng, Y]]		[[Category: Feng, Y]]
	[[Category: Guo, L]]		[[Category: Guo, L]]

OCA at 11:19, 18 July 2018

OCA — Wed, 18 Jul 2018 11:19:58 GMT

←Older revision		Revision as of 11:19, 18 July 2018
Line 1:		Line 1:
		+
	==Solution structure of Sso6901 from Sulfolobus solfataricus P2==		==Solution structure of Sso6901 from Sulfolobus solfataricus P2==
	<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_35091 Atcc 35091~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/'saccharolobus_solfataricus' 'saccharolobus solfataricus']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://pdbe.org/2jtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://pdbe.org/2jtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jtm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jtm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 35091~~]]	+	[[Category: Saccharolobus solfataricus]]
	[[Category: Feng, Y]]		[[Category: Feng, Y]]
	[[Category: Guo, L]]		[[Category: Guo, L]]

OCA at 19:37, 9 February 2016

OCA — Tue, 09 Feb 2016 19:37:49 GMT

←Older revision		Revision as of 19:37, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jtm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:25, 11 September 2015

OCA — Fri, 11 Sep 2015 01:25:25 GMT

←Older revision		Revision as of 01:25, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_solfataricus Sulfolobus solfataricus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://pdbe.org/2jtm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jtm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sulfolobus solfataricus~~]]	+	[[Category: Atcc 35091]]
	[[Category: Feng, Y]]		[[Category: Feng, Y]]
	[[Category: Guo, L]]		[[Category: Guo, L]]

OCA at 09:05, 25 December 2014

OCA — Thu, 25 Dec 2014 09:05:12 GMT

←Older revision		Revision as of 09:05, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CREN7_SULSO CREN7_SULSO]] A highly abundant probable chromatin protein, it binds double-strand DNA without sequence specificity; there is approximately 1 Cren7 molecule for 12 bp of DNA. Constrains negative DNA supercoils, increases DNA stability against thermal denaturation. Binding does not require protein methylation. Binds single-strand DNA weakly.<ref>PMID:18096617</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
-	[[Category: Feng, Y.]]	+	[[Category: Feng, Y]]
-	[[Category: Guo, L.]]	+	[[Category: Guo, L]]
-	[[Category: Huang, L.]]	+	[[Category: Huang, L]]
-	[[Category: Wang, J.]]	+	[[Category: Wang, J]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Sh3-like]]		[[Category: Sh3-like]]

OCA at 10:58, 30 September 2014

OCA — Tue, 30 Sep 2014 10:58:07 GMT

←Older revision		Revision as of 10:58, 30 September 2014
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-	[[~~Image~~:2jtm.~~png\|left~~\|200px]]	+	==Solution structure of Sso6901 from Sulfolobus solfataricus P2==
		+	<StructureSection load='2jtm' size='340' side='right' caption='[[2jtm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jtm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jtm RCSB], [http://www.ebi.ac.uk/pdbsum/2jtm PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jt/2jtm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Archaea contain a variety of chromatin proteins consistent with the evolution of different genome packaging mechanisms. Among the two main kingdoms in the Archaea, Euryarchaeota synthesize histone homologs, whereas Crenarchaeota have not been shown to possess a chromatin protein conserved at the kingdom level. We report the identification of Cren7, a novel family of chromatin proteins highly conserved in the Crenarchaeota. A small, basic, methylated and abundant protein, Cren7 displays a higher affinity for double-stranded DNA than for single-stranded DNA, constrains negative DNA supercoils and is associated with genomic DNA in vivo. The solution structure and DNA-binding surface of Cren7 from the hyperthermophilic crenarchaeon Sulfolobus solfataricus were determined by NMR. The protein adopts an SH3-like fold. It interacts with duplex DNA through a beta-sheet and a long flexible loop, presumably resulting in DNA distortions through intercalation of conserved hydrophobic residues into the DNA structure. These data suggest that the crenarchaeal kingdom in the Archaea shares a common strategy in chromatin organization.

-	~~{{STRUCTURE_2jtm\| PDB=2jtm \| SCENE= }}~~	+	Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea.,Guo L, Feng Y, Zhang Z, Yao H, Luo Y, Wang J, Huang L Nucleic Acids Res. 2008 Mar;36(4):1129-37. Epub 2007 Dec 20. PMID:18096617<ref>PMID:18096617</ref>

-	~~===Solution structure~~ of ~~Sso6901 from Sulfolobus solfataricus P2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18096617}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2jtm]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JTM OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018096617<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
	[[Category: Feng, Y.]]		[[Category: Feng, Y.]]

OCA: Protected "2jtm" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 12:44:35 GMT

Protected "2jtm" [edit=sysop:move=sysop]

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Revision as of 12:44, 7 January 2013