2jv6 - Revision history

OCA at 07:29, 27 January 2022

OCA — Thu, 27 Jan 2022 07:29:25 GMT

←Older revision		Revision as of 07:29, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2jv6' size='340' side='right'caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jv6' size='340' side='right'caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [~~http~~://pdbe.org/2jv6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jv6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jv6 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [https://pdbe.org/2jv6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [https://www.ebi.ac.uk/pdbsum/2jv6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jv6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/POLG_YEFVC POLG_YEFVC]] Capsid protein C self-assembles to form an icosahedral capsid about 30 nm in diameter. The capsid encapsulates the genomic RNA (By similarity). prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response (By similarity). Non-structural protein 2A may be involved viral RNA replication and capsid assembly (Potential). Non-structural protein 2B is a required cofactor for the serine protease function of NS3 (By similarity). Serine protease NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction (By similarity). Non-structural protein 4A induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the NS3 helicase (By similarity). Peptide 2k functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter (By similarity). Non-structural protein 4B inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway (By similarity). RNA-directed RNA polymerase NS5 replicates the viral (+) and (-) genome, and performs the capping of genomes in the cytoplasm. NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions. Besides its role in genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway (By similarity).	+	[[https://www.uniprot.org/uniprot/POLG_YEFVC POLG_YEFVC]] Capsid protein C self-assembles to form an icosahedral capsid about 30 nm in diameter. The capsid encapsulates the genomic RNA (By similarity). prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response (By similarity). Non-structural protein 2A may be involved viral RNA replication and capsid assembly (Potential). Non-structural protein 2B is a required cofactor for the serine protease function of NS3 (By similarity). Serine protease NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction (By similarity). Non-structural protein 4A induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the NS3 helicase (By similarity). Peptide 2k functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter (By similarity). Non-structural protein 4B inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway (By similarity). RNA-directed RNA polymerase NS5 replicates the viral (+) and (-) genome, and performs the capping of genomes in the cytoplasm. NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions. Besides its role in genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:28, 22 April 2020

OCA — Wed, 22 Apr 2020 06:28:54 GMT

←Older revision		Revision as of 06:28, 22 April 2020
Line 1:		Line 1:

	==YF ED3 Protein NMR Structure==		==YF ED3 Protein NMR Structure==
-	<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2jv6' size='340' side='right'caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://pdbe.org/2jv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jv6 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://pdbe.org/2jv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jv6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Flavivirus febricis]]		[[Category: Flavivirus febricis]]
		+	[[Category: Large Structures]]
	[[Category: Anderson, A]]		[[Category: Anderson, A]]
	[[Category: Barrett, A D.T]]		[[Category: Barrett, A D.T]]

OCA at 10:53, 18 July 2018

OCA — Wed, 18 Jul 2018 10:53:48 GMT

←Older revision		Revision as of 10:53, 18 July 2018
Line 1:		Line 1:
		+
	==YF ED3 Protein NMR Structure==		==YF ED3 Protein NMR Structure==
	<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://pdbe.org/2jv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://pdbe.org/2jv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jv6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/2jv6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/2jv6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 03:03, 9 February 2016

OCA — Tue, 09 Feb 2016 03:03:14 GMT

←Older revision		Revision as of 03:03, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jv6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 17:58, 10 September 2015

OCA — Thu, 10 Sep 2015 17:58:42 GMT

←Older revision		Revision as of 17:58, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Yellow_fever_virus Yellow fever virus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavivirus_febricis Flavivirus febricis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://pdbe.org/2jv6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Yellow fever virus~~]]	+	[[Category: Flavivirus febricis]]
	[[Category: Anderson, A]]		[[Category: Anderson, A]]
	[[Category: Barrett, A D.T]]		[[Category: Barrett, A D.T]]

OCA at 03:57, 25 December 2014

OCA — Thu, 25 Dec 2014 03:57:41 GMT

←Older revision		Revision as of 03:57, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/POLG_YEFVC POLG_YEFVC]] Capsid protein C self-assembles to form an icosahedral capsid about 30 nm in diameter. The capsid encapsulates the genomic RNA (By similarity). prM acts as a chaperone for envelope protein E during intracellular virion assembly by masking and inactivating envelope protein E fusion peptide. prM is matured in the last step of virion assembly, presumably to avoid catastrophic activation of the viral fusion peptide induced by the acidic pH of the trans-Golgi network. After cleavage by host furin, the pr peptide is released in the extracellular medium and small envelope protein M and envelope protein E homodimers are dissociated (By similarity). Envelope protein E binding to host cell surface receptor is followed by virus internalization through clathrin-mediated endocytosis. Envelope protein E is subsequently involved in membrane fusion between virion and host late endosomes. Synthesized as a homodimer with prM which acts as a chaperone for envelope protein E. After cleavage of prM, envelope protein E dissociate from small envelope protein M and homodimerizes (By similarity). Non-structural protein 1 is involved in virus replication and regulation of the innate immune response (By similarity). Non-structural protein 2A may be involved viral RNA replication and capsid assembly (Potential). Non-structural protein 2B is a required cofactor for the serine protease function of NS3 (By similarity). Serine protease NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase. NS3 serine protease, in association with NS2B, performs its autocleavage and cleaves the polyprotein at dibasic sites in the cytoplasm: C-prM, NS2A-NS2B, NS2B-NS3, NS3-NS4A, NS4A-2K and NS4B-NS5. NS3 RNA helicase binds RNA and unwinds dsRNA in the 3' to 5' direction (By similarity). Non-structural protein 4A induces host endoplasmic reticulum membrane rearrangements leading to the formation of virus-induced membranous vesicles hosting the dsRNA and polymerase, functioning as a replication complex. NS4A might also regulate the ATPase activity of the NS3 helicase (By similarity). Peptide 2k functions as a signal peptide for NS4B and is required for the interferon antagonism activity of the latter (By similarity). Non-structural protein 4B inhibits interferon (IFN)-induced host STAT1 phosphorylation and nuclear translocation, thereby preventing the establishment of cellular antiviral state by blocking the IFN-alpha/beta pathway (By similarity). RNA-directed RNA polymerase NS5 replicates the viral (+) and (-) genome, and performs the capping of genomes in the cytoplasm. NS5 methylates viral RNA cap at guanine N-7 and ribose 2'-O positions. Besides its role in genome replication, also prevents the establishment of cellular antiviral state by blocking the interferon-alpha/beta (IFN-alpha/beta) signaling pathway (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Yellow fever virus]]		[[Category: Yellow fever virus]]
-	[[Category: Anderson, A.]]	+	[[Category: Anderson, A]]
-	[[Category: Barrett, A D.T.]]	+	[[Category: Barrett, A D.T]]
-	[[Category: Gandham, S H.A.]]	+	[[Category: Gandham, S H.A]]
-	[[Category: Gorenstein, D G.]]	+	[[Category: Gorenstein, D G]]
-	[[Category: May, F J.]]	+	[[Category: May, F J]]
-	[[Category: Volk, D E.]]	+	[[Category: Volk, D E]]
	[[Category: Atp-binding]]		[[Category: Atp-binding]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]

OCA at 09:36, 30 September 2014

OCA — Tue, 30 Sep 2014 09:36:12 GMT

←Older revision		Revision as of 09:36, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2jv6.png\|left\|200px]]~~	+	==YF ED3 Protein NMR Structure==
-		+	<StructureSection load='2jv6' size='340' side='right' caption='[[2jv6]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~{{STRUCTURE_2jv6\| PDB=2jv6 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JV6 FirstGlance]. <br>
-	===YF ED3 Protein NMR Structure===	+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jv6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jv6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jv6 RCSB], [http://www.ebi.ac.uk/pdbsum/2jv6 PDBsum]</span></td></tr>
-		+	<table>
-		+	== Evolutionary Conservation ==
-	==~~About this Structure~~==	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA].	+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/2jv6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Yellow fever virus]]		[[Category: Yellow fever virus]]
	[[Category: Anderson, A.]]		[[Category: Anderson, A.]]

OCA: Protected "2jv6" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 11:51:27 GMT

Protected "2jv6" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:51, 7 January 2013

OCA at 11:51, 7 January 2013

OCA — Mon, 07 Jan 2013 11:51:25 GMT

←Older revision		Revision as of 11:51, 7 January 2013
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-	{{Seed}}
	[[Image:2jv6.png\|left\|200px]]		[[Image:2jv6.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2jv6", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2jv6\| PDB=2jv6 \| SCENE= }}		{{STRUCTURE_2jv6\| PDB=2jv6 \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2JV6~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA].	+	[[2jv6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA].
	[[Category: Yellow fever virus]]		[[Category: Yellow fever virus]]
	[[Category: Anderson, A.]]		[[Category: Anderson, A.]]
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	[[Category: Virion]]		[[Category: Virion]]
	[[Category: Yellow fever]]		[[Category: Yellow fever]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:56:46 2009''

OCA at 03:56, 17 February 2009

OCA — Tue, 17 Feb 2009 03:56:47 GMT

←Older revision		Revision as of 03:56, 17 February 2009
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	{{Seed}}		{{Seed}}
-	[[Image:2jv6.~~jpg~~\|left\|200px]]	+	[[Image:2jv6.png\|left\|200px]]

	<!--		<!--
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	==About this Structure==		==About this Structure==
-	2JV6 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA].	+	2JV6 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Yellow_fever_virus Yellow fever virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JV6 OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Yellow fever virus]]		[[Category: Yellow fever virus]]
	[[Category: Anderson, A.]]		[[Category: Anderson, A.]]
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	[[Category: Yellow fever]]		[[Category: Yellow fever]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Sep~~ 17 ~~14:~~05:~~12 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:56:46 2009''