2jxh - Revision history

OCA at 19:06, 29 May 2024

OCA — Wed, 29 May 2024 19:06:59 GMT

←Older revision		Revision as of 19:06, 29 May 2024
Line 1:		Line 1:

	==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==		==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==
-	<StructureSection load='2jxh' size='340' side='right'caption='[[2jxh~~]], [[NMR_Ensembles_of_Models \| 30 NMR models~~]]' scene=''>	+	<StructureSection load='2jxh' size='340' side='right'caption='[[2jxh]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JXH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'>[[2jxg\|2jxg]], [[2jxi\|2jxi]]</div~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [https://pdbe.org/2jxh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [https://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [https://pdbe.org/2jxh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [https://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9R9T7_PSEPU Q9R9T7_PSEPU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
-	[[Category: Becker, D]]	+	[[Category: Becker D]]
-	[[Category: Halouska, S]]	+	[[Category: Halouska S]]
-	[[Category: Powers, R]]	+	[[Category: Powers R]]
-	[[Category: Zhou, Y]]	+	[[Category: Zhou Y]]
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Proline]]~~	+
-	~~[[Category: Puta]]~~	+
-	~~[[Category: Utilization~~]]	+

OCA at 07:29, 27 January 2022

OCA — Thu, 27 Jan 2022 07:29:56 GMT

←Older revision		Revision as of 07:29, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2jxh' size='340' side='right'caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>		<StructureSection load='2jxh' size='340' side='right'caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2JXH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2jxg\|2jxg]], [[2jxi\|2jxi]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [~~http~~://pdbe.org/2jxh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [https://pdbe.org/2jxh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [https://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:29, 22 April 2020

OCA — Wed, 22 Apr 2020 06:29:33 GMT

←Older revision		Revision as of 06:29, 22 April 2020
Line 1:		Line 1:

	==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==		==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==
-	<StructureSection load='2jxh' size='340' side='right' caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>	+	<StructureSection load='2jxh' size='340' side='right'caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2JXH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://pdbe.org/2jxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://pdbe.org/2jxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
	[[Category: Becker, D]]		[[Category: Becker, D]]

OCA at 10:38, 18 July 2018

OCA — Wed, 18 Jul 2018 10:38:20 GMT

←Older revision		Revision as of 10:38, 18 July 2018
Line 1:		Line 1:
		+
	==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==		==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==
	<StructureSection load='2jxh' size='340' side='right' caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>		<StructureSection load='2jxh' size='340' side='right' caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://pdbe.org/2jxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://pdbe.org/2jxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxh ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/2jxh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/2jxh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 25:		Line 26:
	</div>		</div>
	<div class="pdbe-citations 2jxh" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2jxh" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Proline utilization A\|Proline utilization A]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:47, 8 February 2016

OCA — Mon, 08 Feb 2016 21:47:18 GMT

←Older revision		Revision as of 21:47, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jxh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:41, 10 September 2015

OCA — Thu, 10 Sep 2015 15:41:26 GMT

←Older revision		Revision as of 15:41, 10 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://pdbe.org/2jxh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2jxh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:46, 19 January 2015

OCA — Mon, 19 Jan 2015 17:46:25 GMT

←Older revision		Revision as of 17:46, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
-	[[Category: Becker, D.]]	+	[[Category: Becker, D]]
-	[[Category: Halouska, S.]]	+	[[Category: Halouska, S]]
-	[[Category: Powers, R.]]	+	[[Category: Powers, R]]
-	[[Category: Zhou, Y.]]	+	[[Category: Zhou, Y]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]

OCA at 10:36, 30 September 2014

OCA — Tue, 30 Sep 2014 10:36:06 GMT

←Older revision		Revision as of 10:36, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2jxh.~~png~~\|~~left~~\|200px]]	+	==Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida==
		+	<StructureSection load='2jxh' size='340' side='right' caption='[[2jxh]], [[NMR_Ensembles_of_Models \| 30 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JXH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2jxg\|2jxg]], [[2jxi\|2jxi]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jxh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2jxh RCSB], [http://www.ebi.ac.uk/pdbsum/2jxh PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/2jxh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Proline utilization A (PutA) is a membrane-associated multifunctional enzyme that catalyzes the oxidation of proline to glutamate in a two-step process. In certain, gram-negative bacteria such as Pseudomonas putida, PutA also acts as an auto repressor in the cytoplasm, when an insufficient concentration of proline is available. Here, the N-terminal residues 1-45 of PutA from P. putida (PpPutA45) are shown to be responsible for DNA binding and dimerization. The solution structure of PpPutA45 was determined using NMR methods, where the protein is shown to be a symmetrical homodimer (12 kDa) consisting of two ribbon-helix-helix (RHH) structures. DNA sequence recognition by PpPutA45 was determined using DNA gel mobility shift assays and NMR chemical shift perturbations (CSPs). PpPutA45 was shown to bind a 14 base-pair DNA oligomer (5'-GCGGTTGCACCTTT-3'). A model of the PpPutA45-DNA oligomer complex was generated using Haddock 2.1. The antiparallel beta-sheet that results from PpPutA45 dimerization serves as the DNA recognition binding site by inserting into the DNA major groove. The dimeric core of four alpha-helices provides a structural scaffold for the beta-sheet from which residues Thr5, Gly7, and Lys9 make sequence-specific contacts with the DNA. The structural model implies flexibility of Lys9 which can make hydrogen bond contacts with either guanine or thymine. The high sequence and structure conservation of the PutA RHH domain suggest interdomain interactions play an important role in the evolution of the protein. Proteins 2008. (c) 2008 Wiley-Liss, Inc.

-	~~{{STRUCTURE_2jxh\| PDB=2jxh \| SCENE= }}~~	+	Solution structure of the Pseudomonas putida protein PpPutA45 and its DNA complex.,Halouska S, Zhou Y, Becker DF, Powers R Proteins. 2008 Sep 2. PMID:18767154<ref>PMID:18767154</ref>

-	~~===Solution Structure~~ of ~~DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18767154}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2jxh]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_putida Pseudomonas putida]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018767154<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
	[[Category: Becker, D.]]		[[Category: Becker, D.]]

OCA: Protected "2jxh" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 15:04:45 GMT

Protected "2jxh" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:04, 7 January 2013

OCA at 15:04, 7 January 2013

OCA — Mon, 07 Jan 2013 15:04:43 GMT

←Older revision		Revision as of 15:04, 7 January 2013
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-	{{Seed}}
	[[Image:2jxh.png\|left\|200px]]		[[Image:2jxh.png\|left\|200px]]

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	{{STRUCTURE_2jxh\| PDB=2jxh \| SCENE= }}		{{STRUCTURE_2jxh\| PDB=2jxh \| SCENE= }}

	===Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida===		===Solution Structure of DNA binding domain of Proline Utilization A (PutA) for Psuedomonas putida===

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	{{ABSTRACT_PUBMED_18767154}}		{{ABSTRACT_PUBMED_18767154}}

	==About this Structure==		==About this Structure==
-	~~2JXH~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA].	+	[[2jxh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18767154~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018767154</ref><references group="xtra"/>
	[[Category: Pseudomonas putida]]		[[Category: Pseudomonas putida]]
	[[Category: Becker, D.]]		[[Category: Becker, D.]]
Line 29:		Line 17:
	[[Category: Powers, R.]]		[[Category: Powers, R.]]
	[[Category: Zhou, Y.]]		[[Category: Zhou, Y.]]
-	[[Category: Binding]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
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	[[Category: Puta]]		[[Category: Puta]]
	[[Category: Utilization]]		[[Category: Utilization]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Feb 15 08:44:44 2009''