2k0p - Revision history

OCA at 19:08, 29 May 2024

OCA — Wed, 29 May 2024 19:08:34 GMT

←Older revision		Revision as of 19:08, 29 May 2024
Line 1:		Line 1:

	==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==		==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==
-	<StructureSection load='2k0p' size='340' side='right'caption='[[2k0p~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>	+	<StructureSection load='2k0p' size='340' side='right'caption='[[2k0p]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_sp.~~_group_g~~ Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_sp._'group_G' Streptococcus sp. 'group G']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[2ju6\|2ju6]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solid-state NMR</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. group G])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [https://pdbe.org/2k0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [https://www.ebi.ac.uk/pdbsum/2k0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [https://pdbe.org/2k0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [https://www.ebi.ac.uk/pdbsum/2k0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SPG1_STRSG SPG1_STRSG]] Binds to the constant Fc region of IgG with high affinity.	+	[https://www.uniprot.org/uniprot/SPG1_STRSG SPG1_STRSG] Binds to the constant Fc region of IgG with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 37:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Streptococcus sp. group g]]	+	[[Category: Streptococcus sp. 'group G']]
-	[[Category: Cavalli, A]]	+	[[Category: Cavalli A]]
-	[[Category: Robustelli, P]]	+	[[Category: Robustelli P]]
-	[[Category: Salvatella, X]]	+	[[Category: Salvatella X]]
-	[[Category: Vendruscolo, M]]	+	[[Category: Vendruscolo M]]
-	~~[[Category: Cell wall]]~~	+
-	~~[[Category: Chemical shift restraint]]~~	+
-	~~[[Category: Gb1]]~~	+
-	~~[[Category: Igg-binding protein]]~~	+
-	~~[[Category: Peptidoglycan-anchor]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Secreted]]~~	+
-	~~[[Category: Solid-state~~]]	+

OCA at 08:04, 7 April 2021

OCA — Wed, 07 Apr 2021 08:04:37 GMT

←Older revision		Revision as of 08:04, 7 April 2021
Line 1:		Line 1:

	==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==		==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==
-	<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>	+	<StructureSection load='2k0p' size='340' side='right'caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Streptococcus_sp._group_g Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2K0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_sp._group_g Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ju6\|2ju6]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. group G])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. group G])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [~~http~~://pdbe.org/2k0p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2k0p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0p ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [https://pdbe.org/2k0p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [https://www.ebi.ac.uk/pdbsum/2k0p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SPG1_STRSG SPG1_STRSG]] Binds to the constant Fc region of IgG with high affinity.	+	[[https://www.uniprot.org/uniprot/SPG1_STRSG SPG1_STRSG]] Binds to the constant Fc region of IgG with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Streptococcus sp. group g]]		[[Category: Streptococcus sp. group g]]
	[[Category: Cavalli, A]]		[[Category: Cavalli, A]]

OCA at 11:18, 18 July 2018

OCA — Wed, 18 Jul 2018 11:18:33 GMT

←Older revision		Revision as of 11:18, 18 July 2018
Line 1:		Line 1:
		+
	==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==		==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==
	<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._group_g Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._group_g Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Streptococcus sp. group G])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1320 Streptococcus sp. group G])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://pdbe.org/2k0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://pdbe.org/2k0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k0p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/2k0p_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/2k0p_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 15:58, 9 February 2016

OCA — Tue, 09 Feb 2016 15:58:15 GMT

←Older revision		Revision as of 15:58, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2k0p ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:48, 10 September 2015

OCA — Thu, 10 Sep 2015 23:48:01 GMT

←Older revision		Revision as of 23:48, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._group_g Streptococcus sp. group g]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~2 Bacteria~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id= Streptococcus sp. group G])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://pdbe.org/2k0p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2k0p" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacteria~~]]	+	[[Category: Streptococcus sp. group g]]
	[[Category: Cavalli, A]]		[[Category: Cavalli, A]]
	[[Category: Robustelli, P]]		[[Category: Robustelli, P]]

OCA at 07:55, 25 December 2014

OCA — Thu, 25 Dec 2014 07:55:41 GMT

←Older revision		Revision as of 07:55, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SPG1_STRSG SPG1_STRSG]] Binds to the constant Fc region of IgG with high affinity.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+
		+	==See Also==
		+	*[[Protein G\|Protein G]]
	== References ==		== References ==
	<references/>		<references/>
Line 30:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bacteria]]		[[Category: Bacteria]]
-	[[Category: Cavalli, A.]]	+	[[Category: Cavalli, A]]
-	[[Category: Robustelli, P.]]	+	[[Category: Robustelli, P]]
-	[[Category: Salvatella, X.]]	+	[[Category: Salvatella, X]]
-	[[Category: Vendruscolo, M.]]	+	[[Category: Vendruscolo, M]]
	[[Category: Cell wall]]		[[Category: Cell wall]]
	[[Category: Chemical shift restraint]]		[[Category: Chemical shift restraint]]

OCA at 09:05, 30 September 2014

OCA — Tue, 30 Sep 2014 09:05:15 GMT

←Older revision		Revision as of 09:05, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2k0p.~~png~~\|~~left~~\|200px]]	+	==Determination of a Protein Structure in the Solid State from NMR Chemical Shifts==
		+	<StructureSection load='2k0p' size='340' side='right' caption='[[2k0p]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K0P FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ju6\|2ju6]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k0p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k0p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k0p RCSB], [http://www.ebi.ac.uk/pdbsum/2k0p PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k0/2k0p_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Solid-state NMR spectroscopy does not require proteins to form crystalline or soluble samples and can thus be applied under a variety of conditions, including precipitates, gels, and microcrystals. It has recently been shown that NMR chemical shifts can be used to determine the structures of the native states of proteins in solution. By considering the cases of two proteins, GB1 and SH3, we provide an initial demonstration here that this type of approach can be extended to the use of solid-state NMR chemical shifts to obtain protein structures in the solid state without the need for measuring interatomic distances.

-	~~{{STRUCTURE_2k0p\| PDB=2k0p \| SCENE= }}~~	+	Determination of protein structures in the solid state from NMR chemical shifts.,Robustelli P, Cavalli A, Vendruscolo M Structure. 2008 Dec 10;16(12):1764-9. PMID:19081052<ref>PMID:19081052</ref>

-	~~===Determination~~ of ~~a Protein Structure in~~ the ~~Solid State from NMR Chemical Shifts===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19081052}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2k0p]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacteria Bacteria]~~. ~~Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA].~~	+	</StructureSection>
-		+
-	~~==Reference==~~	+
-	<~~ref group="xtra"~~>~~PMID:019081052~~</~~ref~~>~~<ref group~~=~~"xtra">PMID:017907259</ref><ref group~~=~~"xtra">PMID:017725352</ref><ref group~~=~~"xtra">PMID:017535901~~</~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacteria]]		[[Category: Bacteria]]
	[[Category: Cavalli, A.]]		[[Category: Cavalli, A.]]

OCA at 13:19, 30 January 2013

OCA — Wed, 30 Jan 2013 13:19:51 GMT

←Older revision		Revision as of 13:19, 30 January 2013
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	[[Image:2k0p.png\|left\|200px]]		[[Image:2k0p.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2k0p", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2k0p\| PDB=2k0p \| SCENE= }}		{{STRUCTURE_2k0p\| PDB=2k0p \| SCENE= }}

	===Determination of a Protein Structure in the Solid State from NMR Chemical Shifts===		===Determination of a Protein Structure in the Solid State from NMR Chemical Shifts===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19081052}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19081052 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19081052}}		{{ABSTRACT_PUBMED_19081052}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19081052~~</ref><ref group="xtra">PMID:~~17907259~~</ref><ref group="xtra">PMID:~~17725352~~</ref><ref group="xtra">PMID:~~17535901~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019081052</ref><ref group="xtra">PMID:017907259</ref><ref group="xtra">PMID:017725352</ref><ref group="xtra">PMID:017535901</ref><references group="xtra"/>
	[[Category: Bacteria]]		[[Category: Bacteria]]
	[[Category: Cavalli, A.]]		[[Category: Cavalli, A.]]

OCA: Protected "2k0p" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 21:09:11 GMT

Protected "2k0p" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:09, 14 March 2011

OCA at 21:09, 14 March 2011

OCA — Mon, 14 Mar 2011 21:09:07 GMT

←Older revision		Revision as of 21:09, 14 March 2011
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2k0p.png\|left\|200px]]
-	[[Image:2k0p.~~jpg~~\|left\|200px]]	+

	<!--		<!--
Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2K0P~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA].	+	[[2k0p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K0P OCA].

	==Reference==		==Reference==
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	[[Category: Secreted]]		[[Category: Secreted]]
	[[Category: Solid-state]]		[[Category: Solid-state]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 4 14:28:47 2009''