2k4g - Revision history

OCA at 18:07, 1 November 2023

OCA — Wed, 01 Nov 2023 18:07:32 GMT

←Older revision		Revision as of 18:07, 1 November 2023
Line 1:		Line 1:

	==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==		==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==
-	<StructureSection load='2k4g' size='340' side='right'caption='[[2k4g~~]], [[NMR_Ensembles_of_Models \| 11 NMR models~~]]' scene=''>	+	<StructureSection load='2k4g' size='340' side='right'caption='[[2k4g]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4G FirstGlance]. <br>		<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4G FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NME:METHYLAMINE'>NME</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [https://pdbe.org/2k4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [https://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [https://pdbe.org/2k4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [https://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>
	</table>		</table>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Achim, C]]	+	[[Category: Achim C]]
-	[[Category: Balaeff, A]]	+	[[Category: Balaeff A]]
-	[[Category: Beratan, D]]	+	[[Category: Beratan D]]
-	[[Category: Gil, R]]	+	[[Category: Gil R]]
-	[[Category: Hatcher, E]]	+	[[Category: Hatcher E]]
-	[[Category: He, W]]	+	[[Category: He W]]
-	[[Category: Madrid, M]]	+	[[Category: Madrid M]]
-	~~[[Category: Left-handed duplex]]~~	+
-	~~[[Category: P-form]]~~	+
-	~~[[Category: Peptide nucleic acid]]~~	+
-	~~[[Category: Pna]]~~	+
-	~~[[Category: Pna-pna duplex~~]]	+

OCA at 07:31, 27 January 2022

OCA — Thu, 27 Jan 2022 07:31:33 GMT

←Older revision		Revision as of 07:31, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2k4g' size='340' side='right'caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='2k4g' size='340' side='right'caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2K4G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [~~http~~://pdbe.org/2k4g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [https://pdbe.org/2k4g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [https://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:31, 22 April 2020

OCA — Wed, 22 Apr 2020 06:31:25 GMT

←Older revision		Revision as of 06:31, 22 April 2020
Line 1:		Line 1:

	==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==		==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==
-	<StructureSection load='2k4g' size='340' side='right' caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>	+	<StructureSection load='2k4g' size='340' side='right'caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2K4G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2K4G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://pdbe.org/2k4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://pdbe.org/2k4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Achim, C]]		[[Category: Achim, C]]
	[[Category: Balaeff, A]]		[[Category: Balaeff, A]]

OCA at 10:51, 18 July 2018

OCA — Wed, 18 Jul 2018 10:51:18 GMT

←Older revision		Revision as of 10:51, 18 July 2018
Line 1:		Line 1:
		+
	==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==		==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==
	<StructureSection load='2k4g' size='340' side='right' caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='2k4g' size='340' side='right' caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://pdbe.org/2k4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://pdbe.org/2k4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4g ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:44, 11 September 2015

OCA — Fri, 11 Sep 2015 17:44:27 GMT

←Older revision		Revision as of 17:44, 11 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://pdbe.org/2k4g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2k4g" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 15:39, 19 January 2015

OCA — Mon, 19 Jan 2015 15:39:06 GMT

←Older revision		Revision as of 15:39, 19 January 2015
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achim, C.]]	+	[[Category: Achim, C]]
-	[[Category: Balaeff, A.]]	+	[[Category: Balaeff, A]]
-	[[Category: Beratan, D.]]	+	[[Category: Beratan, D]]
-	[[Category: Gil, R.]]	+	[[Category: Gil, R]]
-	[[Category: Hatcher, E.]]	+	[[Category: Hatcher, E]]
-	[[Category: He, W.]]	+	[[Category: He, W]]
-	[[Category: Madrid, M.]]	+	[[Category: Madrid, M]]
	[[Category: Left-handed duplex]]		[[Category: Left-handed duplex]]
	[[Category: P-form]]		[[Category: P-form]]

OCA at 15:27, 12 October 2014

OCA — Sun, 12 Oct 2014 15:27:22 GMT

←Older revision		Revision as of 15:27, 12 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2k4g.~~png~~\|~~left~~\|~~200px~~]]	+	==Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures==
		+	<StructureSection load='2k4g' size='340' side='right' caption='[[2k4g]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2K4G FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=APN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-ADENINE'>APN</scene>, <scene name='pdbligand=CPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-CYTOSINE'>CPN</scene>, <scene name='pdbligand=GPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE'>GPN</scene>, <scene name='pdbligand=TPN:2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-THYMINE'>TPN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2k4g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2k4g RCSB], [http://www.ebi.ac.uk/pdbsum/2k4g PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	This paper describes the results of a 1D and 2D NMR spectroscopy study of a palindromic 8-base pair PNA duplex GGCATGCC in H 2O and H 2O-D 2O solutions. The (1)H NMR peaks have been assigned for most of the protons of the six central base pairs, as well as for several amide protons of the backbone. The resulting 36 interbase and base-backbone distance restraints were used together with Watson-Crick restraints to generate the PNA duplex structure in the course of 10 independent simulated annealing runs followed by restrained molecular dynamics (MD) simulations in explicit water. The resulting PNA structures correspond to a P-type helix with helical parameters close to those observed in the crystal structures of PNA. Based on the current limited number of restraints obtained from NMR spectra, alternative structures obtained by MD from starting PNA models based on DNA cannot be ruled out and are also discussed.

-	~~{{STRUCTURE_2k4g\| PDB=2k4g \| SCENE= }}~~	+	Solution Structure of a Peptide Nucleic Acid Duplex from NMR Data: Features and Limitations.,He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C J Am Chem Soc. 2008 Sep 10. PMID:18781753<ref>PMID:18781753</ref>

-	~~===Solution Structure~~ of ~~a Peptide Nucleic Acid Duplex, 10 structures===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18781753}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[2k4g]] is a 2 chain structure. Full experimental information is available from [http:~~//~~oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA].~~	+	</StructureSection>
	[[Category: Achim, C.]]		[[Category: Achim, C.]]
	[[Category: Balaeff, A.]]		[[Category: Balaeff, A.]]

OCA: Protected "2k4g" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 11:10:30 GMT

Protected "2k4g" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:10, 7 January 2013

OCA at 11:10, 7 January 2013

OCA — Mon, 07 Jan 2013 11:10:28 GMT

←Older revision		Revision as of 11:10, 7 January 2013
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	[[Image:2k4g.png\|left\|200px]]		[[Image:2k4g.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2k4g\| PDB=2k4g \| SCENE= }}		{{STRUCTURE_2k4g\| PDB=2k4g \| SCENE= }}

	===Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures===		===Solution Structure of a Peptide Nucleic Acid Duplex, 10 structures===

-
-	<!--
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	{{ABSTRACT_PUBMED_18781753}}		{{ABSTRACT_PUBMED_18781753}}

	==About this Structure==		==About this Structure==
-	~~2K4G is a~~ [[~~Single protein~~]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA].	+	[[2k4g]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4G OCA].
-		+
-	~~==Reference==~~	+
-	Solution Structure of a Peptide Nucleic Acid Duplex from NMR Data: Features and Limitations., He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C, J Am Chem Soc. 2008 Sep 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18781753 18781753]	+
-	~~[[Category: Single protein]]~~	+
	[[Category: Achim, C.]]		[[Category: Achim, C.]]
	[[Category: Balaeff, A.]]		[[Category: Balaeff, A.]]
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	[[Category: Pna]]		[[Category: Pna]]
	[[Category: Pna-pna duplex]]		[[Category: Pna-pna duplex]]
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-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct 15 12:31:22 2008''

OCA at 10:31, 15 October 2008

OCA — Wed, 15 Oct 2008 10:31:23 GMT

←Older revision		Revision as of 10:31, 15 October 2008
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	[[Category: Pna-pna duplex]]		[[Category: Pna-pna duplex]]

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