2kbp - Revision history

OCA at 12:50, 20 December 2023

OCA — Wed, 20 Dec 2023 12:50:27 GMT

←Older revision		Revision as of 12:50, 20 December 2023
Line 1:		Line 1:

	==Solution structure of a G-quadruplex of human telomeric RNA==		==Solution structure of a G-quadruplex of human telomeric RNA==
-	<StructureSection load='2kbp' size='340' side='right'caption='[[2kbp~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='2kbp' size='340' side='right'caption='[[2kbp]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [https://pdbe.org/2kbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [https://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [https://pdbe.org/2kbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [https://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Martadinata, H]]	+	[[Category: Martadinata H]]
-	[[Category: Phan~~, A T]]~~	+	[[Category: Phan AT]]
-	~~[[Category: G-quadruplex]]~~	+
-	~~[[Category: Parallel form]]~~	+
-	~~[[Category: Rna]]~~	+
-	~~[[Category: Telomeric~~]]	+

OCA at 07:33, 27 January 2022

OCA — Thu, 27 Jan 2022 07:33:22 GMT

←Older revision		Revision as of 07:33, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2kbp' size='340' side='right'caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2kbp' size='340' side='right'caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2KBP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [~~http~~://pdbe.org/2kbp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [https://pdbe.org/2kbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [https://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:33, 22 April 2020

OCA — Wed, 22 Apr 2020 06:33:25 GMT

←Older revision		Revision as of 06:33, 22 April 2020
Line 1:		Line 1:

	==Solution structure of a G-quadruplex of human telomeric RNA==		==Solution structure of a G-quadruplex of human telomeric RNA==
-	<StructureSection load='2kbp' size='340' side='right' caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='2kbp' size='340' side='right'caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KBP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://pdbe.org/2kbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://pdbe.org/2kbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Martadinata, H]]		[[Category: Martadinata, H]]
	[[Category: Phan, A T]]		[[Category: Phan, A T]]

OCA at 10:28, 18 July 2018

OCA — Wed, 18 Jul 2018 10:28:48 GMT

←Older revision		Revision as of 10:28, 18 July 2018
Line 1:		Line 1:
		+
	==Solution structure of a G-quadruplex of human telomeric RNA==		==Solution structure of a G-quadruplex of human telomeric RNA==
	<StructureSection load='2kbp' size='340' side='right' caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2kbp' size='340' side='right' caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://pdbe.org/2kbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://pdbe.org/2kbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kbp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:09, 11 September 2015

OCA — Fri, 11 Sep 2015 03:09:18 GMT

←Older revision		Revision as of 03:09, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://pdbe.org/2kbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2kbp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:32, 19 January 2015

OCA — Mon, 19 Jan 2015 16:32:21 GMT

←Older revision		Revision as of 16:32, 19 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Martadinata, H.]]	+	[[Category: Martadinata, H]]
-	[[Category: Phan, A T.]]	+	[[Category: Phan, A T]]
	[[Category: G-quadruplex]]		[[Category: G-quadruplex]]
	[[Category: Parallel form]]		[[Category: Parallel form]]
	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Telomeric]]		[[Category: Telomeric]]

OCA at 15:34, 12 October 2014

OCA — Sun, 12 Oct 2014 15:34:47 GMT

←Older revision		Revision as of 15:34, 12 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2kbp.~~png\|left\|200px~~]]	+	==Solution structure of a G-quadruplex of human telomeric RNA==
		+	<StructureSection load='2kbp' size='340' side='right' caption='[[2kbp]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KBP FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kbp RCSB], [http://www.ebi.ac.uk/pdbsum/2kbp PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Very recent studies showed that mammalian telomeres were transcribed into telomeric-repeat-containing RNAs and suggested that these RNA molecules were biologically important. Here we report on a structural study of RNA G-quadruplexes formed by human telomeric RNA sequences in K(+) solution. Our data indicated that these sequences formed propeller-type parallel-stranded RNA G-quadruplexes. We have determined the NMR-based solution structure of a dimeric propeller-type RNA G-quadruplex formed by the 12-nt human telomeric RNA sequence r(UAGGGUUAGGGU). We also observed the stacking of two such propeller-type G-quadruplex blocks for the 10-nt human telomeric RNA sequence r(GGGUUAGGGU) and a higher-order G-quadruplex structure for the 9-nt human telomeric RNA sequence r(GGGUUAGGG). Based on these findings we proposed how higher-order structures might be formed by long telomeric RNA.

-	~~{{STRUCTURE_2kbp\| PDB=2kbp \| SCENE= }}~~	+	Structure of propeller-type parallel-stranded RNA G-quadruplexes, formed by human telomeric RNA sequences in K+ solution.,Martadinata H, Phan AT J Am Chem Soc. 2009 Feb 25;131(7):2570-8. PMID:19183046<ref>PMID:19183046</ref>

-	~~===Solution structure of~~ a ~~G-quadruplex~~ of ~~human telomeric RNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19183046}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2kbp]] is a 2 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2KBP OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019183046<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Martadinata, H.]]		[[Category: Martadinata, H.]]
	[[Category: Phan, A T.]]		[[Category: Phan, A T.]]

OCA: Protected "2kbp" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 14:16:56 GMT

Protected "2kbp" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:16, 7 January 2013

OCA at 14:16, 7 January 2013

OCA — Mon, 07 Jan 2013 14:16:50 GMT

←Older revision		Revision as of 14:16, 7 January 2013
Line 1:		Line 1:
-	~~{{Seed}}~~	+	[[Image:2kbp.png\|left\|200px]]
-	[[Image:2kbp.~~jpg~~\|left\|200px]]	+

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2kbp", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2kbp\| PDB=2kbp \| SCENE= }}		{{STRUCTURE_2kbp\| PDB=2kbp \| SCENE= }}

	===Solution structure of a G-quadruplex of human telomeric RNA===		===Solution structure of a G-quadruplex of human telomeric RNA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19183046}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19183046 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19183046}}		{{ABSTRACT_PUBMED_19183046}}

	==About this Structure==		==About this Structure==
-	~~2KBP~~ is a 2 ~~chains~~ structure. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA].	+	[[2kbp]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19183046~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019183046</ref><references group="xtra"/>
	[[Category: Martadinata, H.]]		[[Category: Martadinata, H.]]
	[[Category: Phan, A T.]]		[[Category: Phan, A T.]]
Line 30:		Line 18:
	[[Category: Rna]]		[[Category: Rna]]
	[[Category: Telomeric]]		[[Category: Telomeric]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:07:57 2009''

OCA at 10:07, 25 March 2009

OCA — Wed, 25 Mar 2009 10:07:59 GMT

←Older revision		Revision as of 10:07, 25 March 2009
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	{{Seed}}
		+	[[Image:2kbp.jpg\|left\|200px]]

-	The ~~entry 2kbp~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2kbp", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2kbp\| PDB=2kbp \| SCENE= }}

-	~~Authors: Martadinata, H., Phan, A.T.~~	+	===Solution structure of a G-quadruplex of human telomeric RNA===

-	Description: Solution structure of a G-quadruplex of human telomeric RNA

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jan 7 09~~:27:11 2009''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_19183046}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 19183046 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_19183046}}
		+
		+	==About this Structure==
		+	2KBP is a 2 chains structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KBP OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:19183046</ref><references group="xtra"/>
		+	[[Category: Martadinata, H.]]
		+	[[Category: Phan, A T.]]
		+	[[Category: G-quadruplex]]
		+	[[Category: Parallel form]]
		+	[[Category: Rna]]
		+	[[Category: Telomeric]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 25 12:07:57 2009''