2kgf - Revision history

OCA at 19:11, 29 May 2024

OCA — Wed, 29 May 2024 19:11:59 GMT

←Older revision		Revision as of 19:11, 29 May 2024
Line 1:		Line 1:

	==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==		==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==
-	<StructureSection load='2kgf' size='340' side='right'caption='[[2kgf~~]], [[NMR_Ensembles_of_Models \| 50 NMR models~~]]' scene=''>	+	<StructureSection load='2kgf' size='340' side='right'caption='[[2kgf]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Mpmv Mpmv~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KGF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mason-Pfizer_monkey_virus Mason-Pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [https://pdbe.org/2kgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [https://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [https://pdbe.org/2kgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [https://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.	+	[https://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mpmv~~]]	+	[[Category: Mason-Pfizer monkey virus]]
-	[[Category: Chmelik, J]]	+	[[Category: Chmelik J]]
-	[[Category: Kaderavek, P]]	+	[[Category: Kaderavek P]]
-	[[Category: Macek, P]]	+	[[Category: Macek P]]
-	[[Category: Padrta, P]]	+	[[Category: Padrta P]]
-	[[Category: Pichova, I]]	+	[[Category: Pichova I]]
-	[[Category: Ruml, T]]	+	[[Category: Ruml T]]
-	[[Category: Rumlova, M]]	+	[[Category: Rumlova M]]
-	[[Category: Sklenar, V]]	+	[[Category: Sklenar V]]
-	[[Category: Zidek, L]]	+	[[Category: Zidek L]]
-	~~[[Category: Capsid protein]]~~	+
-	~~[[Category: Retrovirus capsid protein]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 07:34, 27 January 2022

OCA — Thu, 27 Jan 2022 07:34:29 GMT

←Older revision		Revision as of 07:34, 27 January 2022
Line 3:		Line 3:
	<StructureSection load='2kgf' size='340' side='right'caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>		<StructureSection load='2kgf' size='340' side='right'caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2KGF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [~~http~~://pdbe.org/2kgf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [https://pdbe.org/2kgf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [https://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.	+	[[https://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:34, 22 April 2020

OCA — Wed, 22 Apr 2020 06:34:31 GMT

←Older revision		Revision as of 06:34, 22 April 2020
Line 1:		Line 1:
-	~~{{Large structure}}~~	+
	==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==		==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==
-	<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>	+	<StructureSection load='2kgf' size='340' side='right'caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KGF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://pdbe.org/2kgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://pdbe.org/2kgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>
	</table>		</table>
-	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.		[[http://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.
Line 30:		Line 29:

	==See Also==		==See Also==
-	*[[Virus coat ~~protein~~\|Virus coat ~~protein~~]]	+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mpmv]]		[[Category: Mpmv]]
	[[Category: Chmelik, J]]		[[Category: Chmelik, J]]

OCA at 10:59, 18 July 2018

OCA — Wed, 18 Jul 2018 10:59:07 GMT

←Older revision		Revision as of 10:59, 18 July 2018
Line 1:		Line 1:
		+	{{Large structure}}
	==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==		==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==
	<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>		<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://pdbe.org/2kgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://pdbe.org/2kgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kgf ProSAT]</span></td></tr>
	</table>		</table>
	{{Large structure}}		{{Large structure}}
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/2kgf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/2kgf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:30, 9 February 2016

OCA — Tue, 09 Feb 2016 06:30:55 GMT

←Older revision		Revision as of 06:30, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kgf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:31, 10 September 2015

OCA — Thu, 10 Sep 2015 19:31:31 GMT

←Older revision		Revision as of 19:31, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>		<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mason-pfizer_monkey_virus Mason-pfizer monkey virus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://pdbe.org/2kgf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>
	</table>		</table>
		+	{{Large structure}}
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.		[[http://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.
Line 25:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2kgf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mason-pfizer monkey virus~~]]	+	[[Category: Mpmv]]
	[[Category: Chmelik, J]]		[[Category: Chmelik, J]]
	[[Category: Kaderavek, P]]		[[Category: Kaderavek, P]]

OCA at 05:03, 25 December 2014

OCA — Thu, 25 Dec 2014 05:03:27 GMT

←Older revision		Revision as of 05:03, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason-pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason-pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GAG_MPMV GAG_MPMV]] p10 is the matrix protein. P14 is the nucleocapsid protein. p27 is the capsid protein.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Mason-pfizer monkey virus]]		[[Category: Mason-pfizer monkey virus]]
-	[[Category: Chmelik, J.]]	+	[[Category: Chmelik, J]]
-	[[Category: Kaderavek, P.]]	+	[[Category: Kaderavek, P]]
-	[[Category: Macek, P.]]	+	[[Category: Macek, P]]
-	[[Category: Padrta, P.]]	+	[[Category: Padrta, P]]
-	[[Category: Pichova, I.]]	+	[[Category: Pichova, I]]
-	[[Category: Ruml, T.]]	+	[[Category: Ruml, T]]
-	[[Category: Rumlova, M.]]	+	[[Category: Rumlova, M]]
-	[[Category: Sklenar, V.]]	+	[[Category: Sklenar, V]]
-	[[Category: Zidek, L.]]	+	[[Category: Zidek, L]]
	[[Category: Capsid protein]]		[[Category: Capsid protein]]
	[[Category: Retrovirus capsid protein]]		[[Category: Retrovirus capsid protein]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 08:08, 30 September 2014

OCA — Tue, 30 Sep 2014 08:08:43 GMT

←Older revision		Revision as of 08:08, 30 September 2014
Line 1:		Line 1:
-	~~{{Large structure}}~~	+	==N-terminal domain of capsid protein from the Mason-Pfizer monkey virus==
-	~~{{STRUCTURE_2kgf~~\| ~~PDB~~=2kgf \| ~~SCENE~~= }}	+	<StructureSection load='2kgf' size='340' side='right' caption='[[2kgf]], [[NMR_Ensembles_of_Models \| 50 NMR models]]' scene=''>
-	===N-terminal domain of capsid protein ~~from the~~ Mason-Pfizer monkey virus~~===~~	+	== Structural highlights ==
-	~~{{ABSTRACT_PUBMED_19527730}}~~	+	<table><tr><td colspan='2'>[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason-pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KGF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kgf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kgf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kgf RCSB], [http://www.ebi.ac.uk/pdbsum/2kgf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kg/2kgf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The high-resolution structure of the N-terminal domain (NTD) of the retroviral capsid protein (CA) of Mason-Pfizer monkey virus (M-PMV), a member of the betaretrovirus family, has been determined by NMR. The M-PMV NTD CA structure is similar to the other retroviral capsid structures and is characterized by a six alpha-helix bundle and an N-terminal beta-hairpin, stabilized by an interaction of highly conserved residues, Pro1 and Asp57. Since the role of the beta-hairpin has been shown to be critical for formation of infectious viral core, we also investigated the functional role of M-PMV beta-hairpin in two mutants (i.e., DeltaP1NTDCA and D57ANTDCA) where the salt bridge stabilizing the wild-type structure was disrupted. NMR data obtained for these mutants were compared with those obtained for the wild type. The main structural changes were observed within the beta-hairpin structure; within helices 2, 3, and 5; and in the loop connecting helices 2 and 3. This observation is supported by biochemical data showing different cleavage patterns of the wild-type and the mutated capsid-nucleocapsid fusion protein (CANC) by M-PMV protease. Despite these structural changes, the mutants with disrupted salt bridge are still able to assemble into immature, spherical particles. This confirms that the mutual interaction and topology within the beta-hairpin and helix 3 might correlate with the changes in interaction between immature and mature lattices.

-	~~==About this Structure==~~	+	NMR structure of the N-terminal domain of capsid protein from the mason-pfizer monkey virus.,Macek P, Chmelik J, Krizova I, Kaderavek P, Padrta P, Zidek L, Wildova M, Hadravova R, Chaloupkova R, Pichova I, Ruml T, Rumlova M, Sklenar V J Mol Biol. 2009 Sep 11;392(1):100-14. Epub 2009 Jun 13. PMID:19527730<ref>PMID:19527730</ref>
-	~~[[2kgf]] is a 1 chain~~ structure ~~with sequence~~ from ~~[http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason~~-pfizer monkey virus]. ~~Full experimental information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2KGF OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Virus coat protein\|Virus coat protein]]		*[[Virus coat protein\|Virus coat protein]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:019527730<~~/~~ref~~><~~ref group="xtra">PMID:019636921</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Mason-pfizer monkey virus]]		[[Category: Mason-pfizer monkey virus]]
	[[Category: Chmelik, J.]]		[[Category: Chmelik, J.]]

OCA at 08:24, 11 March 2013

OCA — Mon, 11 Mar 2013 08:24:49 GMT

←Older revision		Revision as of 08:24, 11 March 2013
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-	~~[[Image:2kgf.png\|left\|200px]]~~	+	{{Large structure}}
-		+
	{{STRUCTURE_2kgf\| PDB=2kgf \| SCENE= }}		{{STRUCTURE_2kgf\| PDB=2kgf \| SCENE= }}
-
	===N-terminal domain of capsid protein from the Mason-Pfizer monkey virus===		===N-terminal domain of capsid protein from the Mason-Pfizer monkey virus===
-
	{{ABSTRACT_PUBMED_19527730}}		{{ABSTRACT_PUBMED_19527730}}

OCA at 12:58, 20 October 2012

OCA — Sat, 20 Oct 2012 12:58:30 GMT

←Older revision		Revision as of 12:58, 20 October 2012
Line 1:		Line 1:
	[[Image:2kgf.png\|left\|200px]]		[[Image:2kgf.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_2kgf\| PDB=2kgf \| SCENE= }}		{{STRUCTURE_2kgf\| PDB=2kgf \| SCENE= }}

	===N-terminal domain of capsid protein from the Mason-Pfizer monkey virus===		===N-terminal domain of capsid protein from the Mason-Pfizer monkey virus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19527730}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19527730 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19527730}}		{{ABSTRACT_PUBMED_19527730}}

	==About this Structure==		==About this Structure==
	[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason-pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA].		[[2kgf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mason-pfizer_monkey_virus Mason-pfizer monkey virus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KGF OCA].
		+
		+	==See Also==
		+	*[[Virus coat protein\|Virus coat protein]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19527730~~</ref><ref group="xtra">PMID:~~19636921~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019527730</ref><ref group="xtra">PMID:019636921</ref><references group="xtra"/>
	[[Category: Mason-pfizer monkey virus]]		[[Category: Mason-pfizer monkey virus]]
	[[Category: Chmelik, J.]]		[[Category: Chmelik, J.]]