2kil - Revision history

OCA at 09:39, 22 May 2024

OCA — Wed, 22 May 2024 09:39:26 GMT

←Older revision		Revision as of 09:39, 22 May 2024
Line 1:		Line 1:

	==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==		==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==
-	<StructureSection load='2kil' size='340' side='right'caption='[[2kil~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2kil' size='340' side='right'caption='[[2kil]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_700550 Atcc 700550~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KIL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2kii\|2kii]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">SO2144, SO_2144 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [https://pdbe.org/2kil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [https://www.ebi.ac.uk/pdbsum/2kil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kil ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [https://pdbe.org/2kil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [https://www.ebi.ac.uk/pdbsum/2kil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kil ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8EF49_SHEON Q8EF49_SHEON]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 700550]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Erbil, W K~~]]	+	[[Category: Shewanella oneidensis]]
-	[[Category: ~~H-nox]]~~	+	[[Category: Erbil WK]]
-	~~[[Category: Unknown function~~]]	+

OCA at 07:26, 14 April 2021

OCA — Wed, 14 Apr 2021 07:26:33 GMT

←Older revision		Revision as of 07:26, 14 April 2021
Line 1:		Line 1:

	==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==		==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==
-	<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2kil' size='340' side='right'caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KIL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2kii\|2kii]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [~~http~~://pdbe.org/2kil PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2kil PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2kil ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [https://pdbe.org/2kil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [https://www.ebi.ac.uk/pdbsum/2kil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kil ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 700550]]		[[Category: Atcc 700550]]
		+	[[Category: Large Structures]]
	[[Category: Erbil, W K]]		[[Category: Erbil, W K]]
	[[Category: H-nox]]		[[Category: H-nox]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 10:36, 18 July 2018

OCA — Wed, 18 Jul 2018 10:36:09 GMT

←Older revision		Revision as of 10:36, 18 July 2018
Line 1:		Line 1:
		+
	==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==		==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==
	<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://pdbe.org/2kil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://pdbe.org/2kil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2kil ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/2kil_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/2kil_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 06:02, 9 February 2016

OCA — Tue, 09 Feb 2016 06:02:48 GMT

←Older revision		Revision as of 06:02, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kil ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:20, 10 September 2015

OCA — Thu, 10 Sep 2015 19:20:03 GMT

←Older revision		Revision as of 19:20, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Shewanella_oneidensis Shewanella oneidensis~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700550 Atcc 700550]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KIL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ~~Shewanella oneidensis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 ATCC 700550])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://pdbe.org/2kil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2kil" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Shewanella oneidensis~~]]	+	[[Category: Atcc 700550]]
	[[Category: Erbil, W K]]		[[Category: Erbil, W K]]
	[[Category: H-nox]]		[[Category: H-nox]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 04:54, 25 December 2014

OCA — Thu, 25 Dec 2014 04:54:37 GMT

←Older revision		Revision as of 04:54, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KIL FirstGlance]. <br>		<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KIL FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 Shewanella oneidensis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 Shewanella oneidensis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
-	[[Category: Erbil, W K.]]	+	[[Category: Erbil, W K]]
	[[Category: H-nox]]		[[Category: H-nox]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 07:56, 30 September 2014

OCA — Tue, 30 Sep 2014 07:56:25 GMT

←Older revision		Revision as of 07:56, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2kil.~~png~~\|~~left~~\|200px]]	+	==NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state==
		+	<StructureSection load='2kil' size='340' side='right' caption='[[2kil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KIL FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2kii\|2kii]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SO2144, SO_2144 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=70863 Shewanella oneidensis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kil RCSB], [http://www.ebi.ac.uk/pdbsum/2kil PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/2kil_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Heme nitric oxide/oxygen (H-NOX) proteins are found in eukaryotes where they are typically part of a larger protein such as soluble guanylate cyclase and in prokaryotes where they are often found in operons with a histidine kinase, suggesting that H-NOX proteins serve as sensors for NO and O(2) in signaling pathways. The Fe(II)-NO complex of the H-NOX protein from Shewanella oneidensis inhibits the autophosphorylation of the operon-associated histidine kinase, whereas the ligand-free H-NOX has no effect on the kinase. NMR spectroscopy was used to determine the structures of the Fe(II)-CO complex of the S. oneidensis H-NOX and the Fe(II)-CO complex of the H103G H-NOX mutant as a mimic of the ligand-free and kinase-inhibitory Fe(II)-NO H-NOX, respectively. The results provide a molecular glimpse into the ligand-induced conformational changes that may underlie kinase inhibition and the subsequent control of downstream signaling.

-	~~{{STRUCTURE_2kil\| PDB=2kil \| SCENE= }}~~	+	A structural basis for H-NOX signaling in Shewanella oneidensis by trapping a histidine kinase inhibitory conformation.,Erbil WK, Price MS, Wemmer DE, Marletta MA Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19753-60. Epub 2009 Nov 16. PMID:19918063<ref>PMID:19918063</ref>

-	~~===NMR structure~~ of the ~~H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19918063}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2kil]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Shewanella_oneidensis Shewanella oneidensis]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019918063<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
	[[Category: Erbil, W K.]]		[[Category: Erbil, W K.]]
	[[Category: H-nox]]		[[Category: H-nox]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA: Protected "2kil" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:03:10 GMT

Protected "2kil" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:03, 7 January 2013

OCA at 13:03, 7 January 2013

OCA — Mon, 07 Jan 2013 13:03:07 GMT

←Older revision		Revision as of 13:03, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2kil.png\|left\|200px]]		[[Image:2kil.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2kil", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2kil\| PDB=2kil \| SCENE= }}		{{STRUCTURE_2kil\| PDB=2kil \| SCENE= }}

	===NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state===		===NMR structure of the H103G mutant SO2144 H-NOX domain from Shewanella oneidensis in the Fe(II)CO ligation state===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19918063}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19918063 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_19918063}}		{{ABSTRACT_PUBMED_19918063}}

	==About this Structure==		==About this Structure==
-	~~2KIL~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA].	+	[[2kil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19918063~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019918063</ref><references group="xtra"/>
	[[Category: Shewanella oneidensis]]		[[Category: Shewanella oneidensis]]
	[[Category: Erbil, W K.]]		[[Category: Erbil, W K.]]
	[[Category: H-nox]]		[[Category: H-nox]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:02:23 2010''

OCA at 13:02, 28 January 2010

OCA — Thu, 28 Jan 2010 13:02:24 GMT

←Older revision		Revision as of 13:02, 28 January 2010
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2KIL is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA].	+	2KIL is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Shewanella_oneidensis Shewanella oneidensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KIL OCA].

	==Reference==		==Reference==
Line 29:		Line 29:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Dec 16 11~~:10:~~59 2009~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jan 28 15:02:23 2010''