2ks0 - Revision history

OCA at 09:51, 9 May 2024

OCA — Thu, 09 May 2024 09:51:24 GMT

←Older revision		Revision as of 09:51, 9 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_Y51 Desulfitobacterium hafniense Y51]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_Y51 Desulfitobacterium hafniense Y51]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [https://pdbe.org/2ks0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [https://pdbe.org/2ks0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:47, 14 June 2023

OCA — Wed, 14 Jun 2023 08:47:34 GMT

←Older revision		Revision as of 08:47, 14 June 2023
Line 1:		Line 1:

	==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==		==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==
-	<StructureSection load='2ks0' size='340' side='right'caption='[[2ks0~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2ks0' size='340' side='right'caption='[[2ks0]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Deshy Deshy~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfitobacterium_hafniense_Y51 Desulfitobacterium hafniense Y51]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
-	</td></tr>~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [https://pdbe.org/2ks0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [https://pdbe.org/2ks0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q251Q8_DESHY Q251Q8_DESHY]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Deshy~~]]	+	[[Category: Desulfitobacterium hafniense Y51]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Ciccosanti, C]]	+	[[Category: Ciccosanti C]]
-	[[Category: Cort~~, J R~~]]	+	[[Category: Cort JR]]
-	[[Category: Everett~~, J K~~]]	+	[[Category: Everett JK]]
-	[[Category: Foote~~, E L~~]]	+	[[Category: Foote EL]]
-	[[Category: Janjua, H]]	+	[[Category: Janjua H]]
-	[[Category: Jiang, M]]	+	[[Category: Jiang M]]
-	[[Category: Kennedy~~, M A~~]]	+	[[Category: Kennedy MA]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ramelot TA]]
-	[[Category: Ramelot~~, T A~~]]	+	[[Category: Wang H]]
-	[[Category: Wang, H]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+	[[Category: Yang Y]]
-	[[Category: Yang, Y]]	+
-	~~[[Category: Desulfitobacterium hafniense]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Yabp family~~]]	+

OCA at 07:09, 1 December 2021

OCA — Wed, 01 Dec 2021 07:09:35 GMT

←Older revision		Revision as of 07:09, 1 December 2021
Line 3:		Line 3:
	<StructureSection load='2ks0' size='340' side='right'caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2ks0' size='340' side='right'caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [~~http~~://pdbe.org/2ks0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [https://pdbe.org/2ks0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [https://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:44, 26 February 2020

OCA — Wed, 26 Feb 2020 09:44:05 GMT

←Older revision		Revision as of 09:44, 26 February 2020
Line 1:		Line 1:

	==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==		==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==
-	<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2ks0' size='340' side='right'caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Deshy]]		[[Category: Deshy]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 08:13, 25 July 2018

OCA — Wed, 25 Jul 2018 08:13:03 GMT

←Older revision		Revision as of 08:13, 25 July 2018
Line 1:		Line 1:
		+
	==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==		==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==
	<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://pdbe.org/2ks0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://pdbe.org/2ks0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ks0 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ks0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ks0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ks0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:52, 11 September 2015

OCA — Fri, 11 Sep 2015 16:52:08 GMT

←Older revision		Revision as of 16:52, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Desulfitobacterium_hafniense Desulfitobacterium hafniense~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deshy Deshy]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~49338 Desulfitobacterium hafniense~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=138119 DESHY])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://pdbe.org/2ks0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2ks0" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Desulfitobacterium hafniense~~]]	+	[[Category: Deshy]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]
Line 43:		Line 44:
	[[Category: Xiao, R]]		[[Category: Xiao, R]]
	[[Category: Yang, Y]]		[[Category: Yang, Y]]
		+	[[Category: Desulfitobacterium hafniense]]
	[[Category: Nesg]]		[[Category: Nesg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Yabp family]]		[[Category: Yabp family]]

OCA at 13:46, 19 January 2015

OCA — Mon, 19 Jan 2015 13:46:25 GMT

←Older revision		Revision as of 13:46, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=49338 Desulfitobacterium hafniense])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=49338 Desulfitobacterium hafniense])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Desulfitobacterium hafniense]]		[[Category: Desulfitobacterium hafniense]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Ciccosanti, C.]]	+	[[Category: Ciccosanti, C]]
-	[[Category: Cort, J R.]]	+	[[Category: Cort, J R]]
-	[[Category: Everett, J K.]]	+	[[Category: Everett, J K]]
-	[[Category: Foote, E L.]]	+	[[Category: Foote, E L]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Jiang, M.]]	+	[[Category: Jiang, M]]
-	[[Category: Kennedy, M A.]]	+	[[Category: Kennedy, M A]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Ramelot, T A.]]	+	[[Category: Ramelot, T A]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
-	[[Category: Yang, Y~~.]]~~	+	[[Category: Yang, Y]]
-	~~[[Category: Desulfitobacterium hafniense~~]]	+
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]
	[[Category: Yabp family]]		[[Category: Yabp family]]

OCA at 04:17, 3 October 2014

OCA — Fri, 03 Oct 2014 04:17:07 GMT

←Older revision		Revision as of 04:17, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2ks0\| PDB=2ks0 \| SCENE= }}~~	+	==Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C==
-	===Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C===	+	<StructureSection load='2ks0' size='340' side='right' caption='[[2ks0]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~{{ABSTRACT_PUBMED_20698532}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2ks0]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KS0 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DSY0195 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=49338 Desulfitobacterium hafniense])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ks0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ks0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ks0 RCSB], [http://www.ebi.ac.uk/pdbsum/2ks0 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ks/2ks0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	There is a general need to develop more powerful and more robust methods for structural characterization of homodimers, homo-oligomers, and multiprotein complexes using solution-state NMR methods. In recent years, there has been increasing emphasis on integrating distinct and complementary methodologies for structure determination of multiprotein complexes. One approach not yet widely used is to obtain intermediate and long-range distance constraints from paramagnetic relaxation enhancements (PRE) and electron paramagnetic resonance (EPR)-based techniques such as double electron electron resonance (DEER), which, when used together, can provide supplemental distance constraints spanning to 10-70 A. In this Communication, we describe integration of PRE and DEER data with conventional solution-state nuclear magnetic resonance (NMR) methods for structure determination of Dsy0195, a homodimer (62 amino acids per monomer) from Desulfitobacterium hafniense. Our results indicate that combination of conventional NMR restraints with only one or a few DEER distance constraints and a small number of PRE constraints is sufficient for the automatic NMR-based structure determination program CYANA to build a network of interchain nuclear Overhauser effect constraints that can be used to accurately define both the homodimer interface and the global homodimer structure. The use of DEER distances as a source of supplemental constraints as described here has virtually no upper molecular weight limit, and utilization of the PRE constraints is limited only by the ability to make accurate assignments of the protein amide proton and nitrogen chemical shifts.

-	~~==About this Structure==~~	+	Combining NMR and EPR methods for homodimer protein structure determination.,Yang Y, Ramelot TA, McCarrick RM, Ni S, Feldmann EA, Cort JR, Wang H, Ciccosanti C, Jiang M, Janjua H, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA J Am Chem Soc. 2010 Sep 1;132(34):11910-3. PMID:20698532<ref>PMID:20698532</ref>
-	~~[[2ks0]] is a 2 chain~~ structure ~~with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfitobacterium_hafniense Desulfitobacterium hafniense]~~. ~~Full experimental information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2KS0 OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group="xtra">PMID:020698532</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Desulfitobacterium hafniense]]		[[Category: Desulfitobacterium hafniense]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA at 07:42, 16 May 2013

OCA — Thu, 16 May 2013 07:42:35 GMT

←Older revision		Revision as of 07:42, 16 May 2013
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-	[[Image:2ks0.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_2ks0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2ks0\| PDB=2ks0 \| SCENE= }}		{{STRUCTURE_2ks0\| PDB=2ks0 \| SCENE= }}
-
	===Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C===		===Solution NMR structure of the Q251Q8_DESHY(21-82) protein from Desulfitobacterium Hafniense, Northeast Structural Genomics Consortium Target DhR8C===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_20698532}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 20698532 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_20698532}}		{{ABSTRACT_PUBMED_20698532}}

Line 22:		Line 7:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:020698532</ref><references group="xtra"/>	+	<ref group="xtra">PMID:020698532</ref><references group="xtra"/><references/>
	[[Category: Desulfitobacterium hafniense]]		[[Category: Desulfitobacterium hafniense]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA: Protected "2ks0" [edit=sysop:move=sysop]

OCA — Wed, 13 Jul 2011 07:24:24 GMT

Protected "2ks0" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:24, 13 July 2011