2l7c - Revision history

OCA at 09:42, 22 May 2024

OCA — Wed, 22 May 2024 09:42:11 GMT

←Older revision		Revision as of 09:42, 22 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L7C FirstGlance]. <br>		<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [https://pdbe.org/2l7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [https://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [https://pdbe.org/2l7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [https://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 08:24, 18 January 2023

OCA — Wed, 18 Jan 2023 08:24:37 GMT

←Older revision		Revision as of 08:24, 18 January 2023
Line 1:		Line 1:

	==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==		==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==
-	<StructureSection load='2l7c' size='340' side='right'caption='[[2l7c~~]], [[NMR_Ensembles_of_Models \| 23 NMR models~~]]' scene=''>	+	<StructureSection load='2l7c' size='340' side='right'caption='[[2l7c]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Arath Arath~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L7C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1z2t\|1z2t]]</div></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [https://pdbe.org/2l7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [https://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [https://pdbe.org/2l7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [https://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DGDG2_ARATH DGDG2_ARATH]] Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages.<ref>PMID:11696551</ref> <ref>PMID:14600212</ref>	+	[https://www.uniprot.org/uniprot/DGDG2_ARATH DGDG2_ARATH] Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages.<ref>PMID:11696551</ref> <ref>PMID:14600212</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath]]~~	+	[[Category: Arabidopsis thaliana]]
-	~~[[Category: Digalactosyldiacylglycerol synthase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ge, C]]	+	[[Category: Ge C]]
-	[[Category: Iakovleva, I]]	+	[[Category: Iakovleva I]]
-	[[Category: Lind, J]]	+	[[Category: Lind J]]
-	[[Category: Maler, L]]	+	[[Category: Maler L]]
-	[[Category: Szpryngiel, S]]	+	[[Category: Szpryngiel S]]
-	[[Category: Wieslander, A]]	+	[[Category: Wieslander A]]
-	~~[[Category: Amphipathic helix]]~~	+
-	~~[[Category: Dgdg]]~~	+
-	~~[[Category: Diglycosyldiacylglycerol]]~~	+
-	~~[[Category: Glycosyltransferase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:37, 14 April 2021

OCA — Wed, 14 Apr 2021 07:37:37 GMT

←Older revision		Revision as of 07:37, 14 April 2021
Line 1:		Line 1:

	==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==		==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==
-	<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>	+	<StructureSection load='2l7c' size='340' side='right'caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2L7C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1z2t\|1z2t]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [~~http~~://pdbe.org/2l7c PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [https://pdbe.org/2l7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [https://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DGDG2_ARATH DGDG2_ARATH]] Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages.<ref>PMID:11696551</ref> <ref>PMID:14600212</ref>	+	[[https://www.uniprot.org/uniprot/DGDG2_ARATH DGDG2_ARATH]] Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages.<ref>PMID:11696551</ref> <ref>PMID:14600212</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 26:		Line 26:
	[[Category: Arath]]		[[Category: Arath]]
	[[Category: Digalactosyldiacylglycerol synthase]]		[[Category: Digalactosyldiacylglycerol synthase]]
		+	[[Category: Large Structures]]
	[[Category: Ge, C]]		[[Category: Ge, C]]
	[[Category: Iakovleva, I]]		[[Category: Iakovleva, I]]

OCA at 19:23, 1 August 2018

OCA — Wed, 01 Aug 2018 19:23:23 GMT

←Older revision		Revision as of 19:23, 1 August 2018
Line 1:		Line 1:
		+
	==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==		==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==
	<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>		<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://pdbe.org/2l7c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://pdbe.org/2l7c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2l7c ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 06:00, 11 September 2015

OCA — Fri, 11 Sep 2015 06:00:12 GMT

←Older revision		Revision as of 06:00, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>		<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2L7C FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://pdbe.org/2l7c PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DGDG2_ARATH DGDG2_ARATH]] Involved in the synthesis of diacylglycerol galactolipids that are specifically found in thylakoid membranes. Specific for alpha-glycosidic linkages.<ref>PMID:11696551</ref> <ref>PMID:14600212</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 16:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2l7c" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Digalactosyldiacylglycerol synthase]]		[[Category: Digalactosyldiacylglycerol synthase]]
	[[Category: Ge, C]]		[[Category: Ge, C]]

OCA at 04:56, 22 December 2014

OCA — Mon, 22 Dec 2014 04:56:55 GMT

←Older revision		Revision as of 04:56, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2L7C FirstGlance]. <br>		<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 14:		Line 14:
	Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana.,Szpryngiel S, Ge C, Iakovleva I, Georgiev A, Lind J, Wieslander A, Maler L Biochemistry. 2011 May 31;50(21):4451-66. Epub 2011 May 4. PMID:21506606<ref>PMID:21506606</ref>		Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana.,Szpryngiel S, Ge C, Iakovleva I, Georgiev A, Lind J, Wieslander A, Maler L Biochemistry. 2011 May 31;50(21):4451-66. Epub 2011 May 4. PMID:21506606<ref>PMID:21506606</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 22:		Line 22:
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Digalactosyldiacylglycerol synthase]]		[[Category: Digalactosyldiacylglycerol synthase]]
-	[[Category: Ge, C.]]	+	[[Category: Ge, C]]
-	[[Category: Iakovleva, I.]]	+	[[Category: Iakovleva, I]]
-	[[Category: Lind, J.]]	+	[[Category: Lind, J]]
-	[[Category: Maler, L.]]	+	[[Category: Maler, L]]
-	[[Category: Szpryngiel, S.]]	+	[[Category: Szpryngiel, S]]
-	[[Category: Wieslander, A.]]	+	[[Category: Wieslander, A]]
	[[Category: Amphipathic helix]]		[[Category: Amphipathic helix]]
	[[Category: Dgdg]]		[[Category: Dgdg]]

OCA at 10:28, 28 May 2014

OCA — Wed, 28 May 2014 10:28:23 GMT

←Older revision		Revision as of 10:28, 28 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2l7c.~~png~~\|~~left~~\|~~200px~~]]	+	==Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana==
		+	<StructureSection load='2l7c' size='340' side='right' caption='[[2l7c]], [[NMR_Ensembles_of_Models \| 23 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2L7C FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z2t\|1z2t]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DGD2, At4g00550, F6N23.24 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Digalactosyldiacylglycerol_synthase Digalactosyldiacylglycerol synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.241 2.4.1.241] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2l7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2l7c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2l7c RCSB], [http://www.ebi.ac.uk/pdbsum/2l7c PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Membrane lipid glycosyltransferases (GTs) in plants are enzymes that regulate the levels of the non-bilayer prone monogalactosyldiacylglycerol (GalDAG) and the bilayer-forming digalactosyldiacylglycerol (GalGalDAG). The relative amounts of these lipids affect membrane properties such as curvature and lateral stress. During phosphate shortage, phosphate is rescued by replacing phospholipids with GalGalDAG. The glycolsyltransferase enzyme in Arabidopsis thaliana responsible for this, atDGD2, senses the bilayer properties and interacts with the membrane in a monotopic manner. To understand the parameters that govern this interaction, we have identified several possible lipid-interacting sites in the protein and studied these by biophysical techniques. We have developed a multivariate discrimination algorithm that correctly predicts the regions in the protein that interact with lipids, and the interactions were confirmed by a variety of biophysical techniques. We show by bioinformatic methods and circular dichroism (CD), fluorescence, and NMR spectroscopic techniques that two regions are prone to interact with lipids in a surface-charge dependent way. Both of these regions contain Trp residues, but here charge appears to be the dominating feature governing the interaction. The sequence corresponding to residues 227-245 in the protein is seen to be able to adapt its structure according to the surface-charge density of a bilayer. All results indicate that this region interacts specifically with lipid molecules and that a second region in the protein, corresponding to residues 130-148, also interacts with the bilayer. On the basis of this, and sequence charge features in the immediate environment of S227-245, a response model for the interaction of atDGD2 with the membrane bilayer interface is proposed.

-	~~{{STRUCTURE_2l7c\| PDB=2l7c \| SCENE= }}~~	+	Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana.,Szpryngiel S, Ge C, Iakovleva I, Georgiev A, Lind J, Wieslander A, Maler L Biochemistry. 2011 May 31;50(21):4451-66. Epub 2011 May 4. PMID:21506606<ref>PMID:21506606</ref>

-	~~===Biophysical studies~~ of ~~lipid interacting regions of DGD2 in Arabidopsis thaliana===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_21506606}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2l7c]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:021506606<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Digalactosyldiacylglycerol synthase]]		[[Category: Digalactosyldiacylglycerol synthase]]

OCA at 06:10, 25 July 2012

OCA — Wed, 25 Jul 2012 06:10:09 GMT

←Older revision		Revision as of 06:10, 25 July 2012
Line 1:		Line 1:
	[[Image:2l7c.png\|left\|200px]]		[[Image:2l7c.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2l7c", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2l7c\| PDB=2l7c \| SCENE= }}		{{STRUCTURE_2l7c\| PDB=2l7c \| SCENE= }}

	===Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana===		===Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_21506606}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 21506606 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_21506606}}		{{ABSTRACT_PUBMED_21506606}}

OCA at 10:08, 30 October 2011

OCA — Sun, 30 Oct 2011 10:08:24 GMT

←Older revision		Revision as of 10:08, 30 October 2011
Line 1:		Line 1:
-	~~'''Unreleased structure'''~~	+	[[Image:2l7c.png\|left\|200px]]

-	The ~~entry 2l7c~~ is ~~ON HOLD~~ ~~until Paper Publication~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2l7c", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2l7c\| PDB=2l7c \| SCENE= }}

-	~~Authors: Szpryngiel, S., Ge, C., Iakovleva, I., Lind, J., Wieslander, A., Maler, L.~~	+	===Biophysical studies of lipid interacting regions of DGD2 in Arabidopsis thaliana===

-	~~Description~~: ~~Biophysical studies of lipid interacting regions of DGD2 in~~ Arabidopsis thaliana	+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_21506606}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 21506606 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_21506606}}
		+
		+	==About this Structure==
		+	[[2l7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2L7C OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:021506606</ref><references group="xtra"/>
		+	[[Category: Arabidopsis thaliana]]
		+	[[Category: Digalactosyldiacylglycerol synthase]]
		+	[[Category: Ge, C.]]
		+	[[Category: Iakovleva, I.]]
		+	[[Category: Lind, J.]]
		+	[[Category: Maler, L.]]
		+	[[Category: Szpryngiel, S.]]
		+	[[Category: Wieslander, A.]]
		+	[[Category: Amphipathic helix]]
		+	[[Category: Dgdg]]
		+	[[Category: Diglycosyldiacylglycerol]]
		+	[[Category: Glycosyltransferase]]
		+	[[Category: Transferase]]

OCA: Protected "2l7c" [edit=sysop:move=sysop]

OCA — Wed, 02 Mar 2011 06:26:11 GMT

Protected "2l7c" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:26, 2 March 2011