2lnu - Revision history

OCA at 06:56, 1 May 2024

OCA — Wed, 01 May 2024 06:56:37 GMT

←Older revision		Revision as of 06:56, 1 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui_ATCC_43049 Haloarcula marismortui ATCC 43049]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui_ATCC_43049 Haloarcula marismortui ATCC 43049]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [https://pdbe.org/2lnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [https://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [https://pdbe.org/2lnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [https://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q5V502_HALMA Q5V502_HALMA]		[https://www.uniprot.org/uniprot/Q5V502_HALMA Q5V502_HALMA]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	We have developed an approach for determining NMR structures of proteins over 20 kDa that utilizes sparse distance restraints obtained using transverse relaxation optimized spectroscopy experiments on perdeuterated samples to guide RASREC Rosetta NMR structure calculations. The method was tested on 11 proteins ranging from 15 to 40 kDa, seven of which were previously unsolved. The RASREC Rosetta models were in good agreement with models obtained using traditional NMR methods with larger restraint sets. In five cases X-ray structures were determined or were available, allowing comparison of the accuracy of the Rosetta models and conventional NMR models. In all five cases, the Rosetta models were more similar to the X-ray structures over both the backbone and side-chain conformations than the "best effort" structures determined by conventional methods. The incorporation of sparse distance restraints into RASREC Rosetta allows routine determination of high-quality solution NMR structures for proteins up to 40 kDa, and should be broadly useful in structural biology.
-
-	Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.,Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10873-8. Epub 2012 Jun 25. PMID:22733734<ref>PMID:22733734</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2lnu" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:09, 15 February 2023

OCA — Wed, 15 Feb 2023 11:09:32 GMT

←Older revision		Revision as of 11:09, 15 February 2023
Line 1:		Line 1:

	==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==		==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==
-	<StructureSection load='2lnu' size='340' side='right'caption='[[2lnu~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2lnu' size='340' side='right'caption='[[2lnu]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Halma Halma~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haloarcula_marismortui_ATCC_43049 Haloarcula marismortui ATCC 43049]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [https://pdbe.org/2lnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [https://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [https://pdbe.org/2lnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [https://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5V502_HALMA Q5V502_HALMA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Halma~~]]	+	[[Category: Haloarcula marismortui ATCC 43049]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Ciccosanti, C]]	+	[[Category: Ciccosanti C]]
-	[[Category: Everett~~, J K~~]]	+	[[Category: Everett JK]]
-	[[Category: Janjua, H]]	+	[[Category: Janjua H]]
-	[[Category: Lange~~, O F~~]]	+	[[Category: Lange OF]]
-	[[Category: Lee, H]]	+	[[Category: Lee H]]
-	[[Category: Liu, G]]	+	[[Category: Liu G]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Rossi P]]
-	[[Category: Rossi, P]]	+	[[Category: Wang H]]
-	[[Category: Wang, H]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Psi-biology]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 10:14, 12 May 2021

OCA — Wed, 12 May 2021 10:14:36 GMT

←Older revision		Revision as of 10:14, 12 May 2021
Line 1:		Line 1:

	==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==		==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==
-	<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2lnu' size='340' side='right'caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Halma Halma]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2LNU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halma Halma]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [~~http~~://pdbe.org/2lnu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [https://pdbe.org/2lnu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [https://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Halma]]		[[Category: Halma]]
		+	[[Category: Large Structures]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 19:52, 1 August 2018

OCA — Wed, 01 Aug 2018 19:52:15 GMT

←Older revision		Revision as of 19:52, 1 August 2018
Line 1:		Line 1:
		+
	==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==		==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==
	<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halma Halma]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halma Halma]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://pdbe.org/2lnu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://pdbe.org/2lnu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnu ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:52, 12 September 2015

OCA — Sat, 12 Sep 2015 00:52:45 GMT

←Older revision		Revision as of 00:52, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Haloarcula_marismortui Haloarcula marismortui~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halma Halma]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~2238 Haloarcula marismortui~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272569 HALMA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://pdbe.org/2lnu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2lnu" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Haloarcula marismortui~~]]	+	[[Category: Halma]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciccosanti, C]]		[[Category: Ciccosanti, C]]

OCA at 06:34, 22 December 2014

OCA — Mon, 22 Dec 2014 06:34:20 GMT

←Older revision		Revision as of 06:34, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2238 Haloarcula marismortui])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2238 Haloarcula marismortui])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 12:		Line 12:
	Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.,Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10873-8. Epub 2012 Jun 25. PMID:22733734<ref>PMID:22733734</ref>		Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.,Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10873-8. Epub 2012 Jun 25. PMID:22733734<ref>PMID:22733734</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==
Line 19:		Line 19:
	</StructureSection>		</StructureSection>
	[[Category: Haloarcula marismortui]]		[[Category: Haloarcula marismortui]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Ciccosanti, C.]]	+	[[Category: Ciccosanti, C]]
-	[[Category: Everett, J K.]]	+	[[Category: Everett, J K]]
-	[[Category: Janjua, H.]]	+	[[Category: Janjua, H]]
-	[[Category: Lange, O F.]]	+	[[Category: Lange, O F]]
-	[[Category: Lee, H.]]	+	[[Category: Lee, H]]
-	[[Category: Liu, G.]]	+	[[Category: Liu, G]]
-	[[Category: Montelione, G T~~.]]~~	+	[[Category: Montelione, G T]]
-	~~[[Category: NESG, Northeast Structural Genomics Consortium.]]~~	+
-	~~[[Category: Rossi, P.]]~~	+
-	~~[[Category: Wang, H.]]~~	+
-	~~[[Category: Xiao, R.]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi-biology~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Rossi, P]]
		+	[[Category: Wang, H]]
		+	[[Category: Xiao, R]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Psi-biology]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 09:42, 21 May 2014

OCA — Wed, 21 May 2014 09:42:59 GMT

←Older revision		Revision as of 09:42, 21 May 2014
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-	[[~~Image:~~2lnu.~~png~~\|~~left\|200px~~]]	+	==Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11==
		+	<StructureSection load='2lnu' size='340' side='right' caption='[[2lnu]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LNU FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rrnAC0354 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2238 Haloarcula marismortui])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lnu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lnu RCSB], [http://www.ebi.ac.uk/pdbsum/2lnu PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We have developed an approach for determining NMR structures of proteins over 20 kDa that utilizes sparse distance restraints obtained using transverse relaxation optimized spectroscopy experiments on perdeuterated samples to guide RASREC Rosetta NMR structure calculations. The method was tested on 11 proteins ranging from 15 to 40 kDa, seven of which were previously unsolved. The RASREC Rosetta models were in good agreement with models obtained using traditional NMR methods with larger restraint sets. In five cases X-ray structures were determined or were available, allowing comparison of the accuracy of the Rosetta models and conventional NMR models. In all five cases, the Rosetta models were more similar to the X-ray structures over both the backbone and side-chain conformations than the "best effort" structures determined by conventional methods. The incorporation of sparse distance restraints into RASREC Rosetta allows routine determination of high-quality solution NMR structures for proteins up to 40 kDa, and should be broadly useful in structural biology.

-	~~{{STRUCTURE_2lnu\| PDB=2lnu \| SCENE= }}~~	+	Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.,Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10873-8. Epub 2012 Jun 25. PMID:22733734<ref>PMID:22733734</ref>

-	~~===Solution NMR Structure~~ of the ~~uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22733734}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2lnu]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Haloarcula_marismortui Haloarcula marismortui]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022733734<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Haloarcula marismortui]]		[[Category: Haloarcula marismortui]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA at 04:35, 18 July 2012

OCA — Wed, 18 Jul 2012 04:35:58 GMT

←Older revision		Revision as of 04:35, 18 July 2012
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	===Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11===		===Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11===

		+	{{ABSTRACT_PUBMED_22733734}}

	==About this Structure==		==About this Structure==
	[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA].		[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022733734</ref><references group="xtra"/>
	[[Category: Haloarcula marismortui]]		[[Category: Haloarcula marismortui]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA at 04:48, 27 June 2012

OCA — Wed, 27 Jun 2012 04:48:44 GMT

←Older revision		Revision as of 04:48, 27 June 2012
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-	[[Image:2lnu.~~jpg~~\|left\|200px]]	+	[[Image:2lnu.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2lnu", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2lnu\| PDB=2lnu \| SCENE= }}		{{STRUCTURE_2lnu\| PDB=2lnu \| SCENE= }}

OCA at 10:48, 18 January 2012

OCA — Wed, 18 Jan 2012 10:48:31 GMT

←Older revision		Revision as of 10:48, 18 January 2012
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-	~~'''Unreleased structure'''~~	+	[[Image:2lnu.jpg\|left\|200px]]

-	The ~~entry 2lnu~~ is ~~ON HOLD~~	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2lnu", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2lnu\| PDB=2lnu \| SCENE= }}

-	~~Authors: Rossi~~, ~~P., Liu, G., Lange, O.F., Lee, H., Janjua, H., Ciccosanti, C., Wang, H., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T.~~	+	===Solution NMR Structure of the uncharacterized protein from gene locus rrnAC0354 of Haloarcula marismortui, Northeast Structural Genomics Consortium Target HmR11===

-	~~Description: Solution NMR~~ Structure ~~of the uncharacterized protein~~ from ~~gene locus rrnAC0354 of~~ Haloarcula marismortui. Northeast Structural Genomics Consortium ~~Target HmR11~~.	+
		+	==About this Structure==
		+	[[2lnu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haloarcula_marismortui Haloarcula marismortui]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNU OCA].
		+	[[Category: Haloarcula marismortui]]
		+	[[Category: Acton, T B.]]
		+	[[Category: Ciccosanti, C.]]
		+	[[Category: Everett, J K.]]
		+	[[Category: Janjua, H.]]
		+	[[Category: Lange, O F.]]
		+	[[Category: Lee, H.]]
		+	[[Category: Liu, G.]]
		+	[[Category: Montelione, G T.]]
		+	[[Category: NESG, Northeast Structural Genomics Consortium.]]
		+	[[Category: Rossi, P.]]
		+	[[Category: Wang, H.]]
		+	[[Category: Xiao, R.]]
		+	[[Category: Protein structure initiative]]
		+	[[Category: Psi-biology]]
		+	[[Category: Structural genomic]]
		+	[[Category: Unknown function]]