2lun - Revision history

OCA at 05:52, 15 May 2024

OCA — Wed, 15 May 2024 05:52:27 GMT

←Older revision		Revision as of 05:52, 15 May 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [https://pdbe.org/2lun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [https://www.ebi.ac.uk/pdbsum/2lun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lun ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [https://pdbe.org/2lun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [https://www.ebi.ac.uk/pdbsum/2lun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lun ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:13, 14 June 2023

OCA — Wed, 14 Jun 2023 09:13:53 GMT

←Older revision		Revision as of 09:13, 14 June 2023
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	==RNA Aptamer for B. anthracis Ribosomal Protein S8==		==RNA Aptamer for B. anthracis Ribosomal Protein S8==
-	<StructureSection load='2lun' size='340' side='right'caption='[[2lun~~]], [[NMR_Ensembles_of_Models \| 8 NMR models~~]]' scene=''>	+	<StructureSection load='2lun' size='340' side='right'caption='[[2lun]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Nikonowicz~~, E P~~]]	+	[[Category: Nikonowicz EP]]
-	[[Category: Wang, J]]	+	[[Category: Wang J]]
-	~~[[Category: Aptamer]]~~	+
-	~~[[Category: Non-canonical base pair]]~~	+
-	~~[[Category: Protein s8]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Rna]]~~	+
-	~~[[Category: Selex~~]]	+

OCA at 16:39, 3 November 2021

OCA — Wed, 03 Nov 2021 16:39:54 GMT

←Older revision		Revision as of 16:39, 3 November 2021
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	<StructureSection load='2lun' size='340' side='right'caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>		<StructureSection load='2lun' size='340' side='right'caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2LUN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [~~http~~://pdbe.org/2lun PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2lun PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2lun ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [https://pdbe.org/2lun PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [https://www.ebi.ac.uk/pdbsum/2lun PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lun ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:45, 29 January 2020

OCA — Wed, 29 Jan 2020 16:45:23 GMT

←Older revision		Revision as of 16:45, 29 January 2020
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	==RNA Aptamer for B. anthracis Ribosomal Protein S8==		==RNA Aptamer for B. anthracis Ribosomal Protein S8==
-	<StructureSection load='2lun' size='340' side='right' caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>	+	<StructureSection load='2lun' size='340' side='right'caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nikonowicz, E P]]		[[Category: Nikonowicz, E P]]
	[[Category: Wang, J]]		[[Category: Wang, J]]

OCA at 06:03, 18 April 2018

OCA — Wed, 18 Apr 2018 06:03:36 GMT

←Older revision		Revision as of 06:03, 18 April 2018
Line 1:		Line 1:
		+
	==RNA Aptamer for B. anthracis Ribosomal Protein S8==		==RNA Aptamer for B. anthracis Ribosomal Protein S8==
	<StructureSection load='2lun' size='340' side='right' caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>		<StructureSection load='2lun' size='340' side='right' caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://pdbe.org/2lun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://pdbe.org/2lun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2lun ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	TatD is an evolutionarily conserved protein with thousands of homologues in all kingdoms of life. It has been suggested that TatD participates in DNA fragmentation during apoptosis in eukaryotic cells. However, the cellular functions and biochemical properties of TatD in bacterial and non-apoptotic eukaryotic cells remain elusive. Here we show that Escherichia coli TatD is a Mg2+-dependent 3'-5' exonuclease that prefers to digest single-stranded DNA and RNA. TatD-knockout cells are less resistant to the DNA damaging agent hydrogen peroxide, and TatD can remove damaged deaminated nucleotides from a DNA chain, suggesting that it may play a role in the H2O2-induced DNA repair. The crystal structure of the apo-form TatD and TatD bound to a single-stranded three-nucleotide DNA was determined by X-ray diffraction methods at a resolution of 2.0 and 2.9 A, respectively. TatD has a TIM-barrel fold and the single-stranded DNA is bound at the loop region on the top of the barrel. Mutational studies further identify important conserved metal ion-binding and catalytic residues in the TatD active site for DNA hydrolysis. We thus conclude that TatD is a new class of TIM-barrel 3'-5' exonuclease that not only degrades chromosomal DNA during apoptosis but also processes single-stranded DNA during DNA repair.
		+
		+	Structure and function of TatD exonuclease in DNA repair.,Chen YC, Li CL, Hsiao YY, Duh Y, Yuan HS Nucleic Acids Res. 2014 Aug 11. pii: gku732. PMID:25114049<ref>PMID:25114049</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2lun" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 20:47, 10 September 2015

OCA — Thu, 10 Sep 2015 20:47:00 GMT

←Older revision		Revision as of 20:47, 10 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://pdbe.org/2lun PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 14:21, 5 January 2015

OCA — Mon, 05 Jan 2015 14:21:39 GMT

←Older revision		Revision as of 14:21, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>
-	<table>	+	</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Nikonowicz, E P.]]	+	[[Category: Nikonowicz, E P]]
-	[[Category: Wang, J.]]	+	[[Category: Wang, J]]
	[[Category: Aptamer]]		[[Category: Aptamer]]
	[[Category: Non-canonical base pair]]		[[Category: Non-canonical base pair]]

OCA at 05:55, 27 August 2014

OCA — Wed, 27 Aug 2014 05:55:01 GMT

←Older revision		Revision as of 05:55, 27 August 2014
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-	~~{{STRUCTURE_2lun\| PDB=2lun \| SCENE= }}~~	+	==RNA Aptamer for B. anthracis Ribosomal Protein S8==
-	===RNA Aptamer for B. anthracis Ribosomal Protein S8===	+	<StructureSection load='2lun' size='340' side='right' caption='[[2lun]], [[NMR_Ensembles_of_Models \| 8 NMR models]]' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LUN FirstGlance]. <br>
-	[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA].	+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lun FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lun OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lun RCSB], [http://www.ebi.ac.uk/pdbsum/2lun PDBsum]</span></td></tr>
		+	<table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Nikonowicz, E P.]]		[[Category: Nikonowicz, E P.]]
	[[Category: Wang, J.]]		[[Category: Wang, J.]]

OCA at 10:30, 18 December 2013

OCA — Wed, 18 Dec 2013 10:30:38 GMT

←Older revision		Revision as of 10:30, 18 December 2013
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-	~~'''Unreleased structure'''~~	+	{{STRUCTURE_2lun\| PDB=2lun \| SCENE= }}
		+	===RNA Aptamer for B. anthracis Ribosomal Protein S8===

-	~~The entry~~ 2lun is ~~ON HOLD until Dec 17 2014~~	+	==About this Structure==
-		+	[[2lun]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LUN OCA].
-	~~Authors~~: Nikonowicz, E.P., Wang, J.	+	[[Category: Nikonowicz, E P.]]
-		+	[[Category: Wang, J.]]
-	~~Description~~: ~~RNA~~ Aptamer ~~for B. anthracis Ribosomal~~ Protein S8	+	[[Category: Aptamer]]
		+	[[Category: Non-canonical base pair]]
		+	[[Category: Protein s8]]
		+	[[Category: Ribosome]]
		+	[[Category: Rna]]
		+	[[Category: Selex]]

OCA at 03:09, 20 September 2013

OCA — Fri, 20 Sep 2013 03:09:36 GMT

←Older revision		Revision as of 03:09, 20 September 2013
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2lun is ON HOLD until ~~Sep 18~~ 2014	+	The entry 2lun is ON HOLD until Dec 17 2014

	Authors: Nikonowicz, E.P., Wang, J.		Authors: Nikonowicz, E.P., Wang, J.

	Description: RNA Aptamer for B. anthracis Ribosomal Protein S8		Description: RNA Aptamer for B. anthracis Ribosomal Protein S8