2mcf - Revision history

OCA at 06:31, 2 March 2023

OCA — Thu, 02 Mar 2023 06:31:20 GMT

←Older revision		Revision as of 06:31, 2 March 2023
Line 1:		Line 1:

	==NMR structure of TGAM_1934==		==NMR structure of TGAM_1934==
-	<StructureSection load='2mcf' size='340' side='right'caption='[[2mcf~~]], [[NMR_Ensembles_of_Models \| 15 NMR models~~]]' scene=''>	+	<StructureSection load='2mcf' size='340' side='right'caption='[[2mcf]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thegj Thegj~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MCF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_gammatolerans_EJ3 Thermococcus gammatolerans EJ3]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TGAM_1934 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=593117 THEGJ])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [https://pdbe.org/2mcf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [https://www.ebi.ac.uk/pdbsum/2mcf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mcf ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [https://pdbe.org/2mcf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [https://www.ebi.ac.uk/pdbsum/2mcf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mcf ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C5A217_THEGJ C5A217_THEGJ]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thegj~~]]	+	[[Category: Thermococcus gammatolerans EJ3]]
-	[[Category: Guillen, K ~~Montet de~~]]	+	[[Category: Montet de Guillen K]]
-	[[Category: Roumestand, C]]	+	[[Category: Roumestand C]]
-	[[Category: Yang, Y]]	+	[[Category: Yang Y]]
-	~~[[Category: Tgam]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 10:07, 26 May 2021

OCA — Wed, 26 May 2021 10:07:28 GMT

←Older revision		Revision as of 10:07, 26 May 2021
Line 1:		Line 1:

	==NMR structure of TGAM_1934==		==NMR structure of TGAM_1934==
-	<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>	+	<StructureSection load='2mcf' size='340' side='right'caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thegj Thegj]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2MCF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thegj Thegj]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TGAM_1934 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=593117 THEGJ])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TGAM_1934 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=593117 THEGJ])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [~~http~~://pdbe.org/2mcf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2mcf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2mcf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [https://pdbe.org/2mcf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [https://www.ebi.ac.uk/pdbsum/2mcf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mcf ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thegj]]		[[Category: Thegj]]
	[[Category: Guillen, K Montet de]]		[[Category: Guillen, K Montet de]]

OCA at 23:04, 9 August 2018

OCA — Thu, 09 Aug 2018 23:04:28 GMT

←Older revision		Revision as of 23:04, 9 August 2018
Line 1:		Line 1:
		+
	==NMR structure of TGAM_1934==		==NMR structure of TGAM_1934==
	<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thegj Thegj]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://pdbe.org/2mcf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TGAM_1934 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=593117 THEGJ])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://pdbe.org/2mcf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mcf ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 18:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Thegj]]
	[[Category: Guillen, K Montet de]]		[[Category: Guillen, K Montet de]]
	[[Category: Roumestand, C]]		[[Category: Roumestand, C]]

OCA at 18:30, 27 January 2016

OCA — Wed, 27 Jan 2016 18:30:07 GMT

←Older revision		Revision as of 18:30, 27 January 2016
Line 1:		Line 1:
-	==NMR structure of ~~Tgam~~==	+	==NMR structure of TGAM_1934==
	<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>		<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 5:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://pdbe.org/2mcf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://pdbe.org/2mcf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ORFans are hypothetical proteins lacking any significant sequence similarity with other proteins. Here, we highlighted by quantitative proteomics the TGAM_1934 ORFan from the hyperradioresistant Thermococcus gammatolerans archaeon as one of the most abundant hypothetical proteins. This protein has been selected as a priority target for structure determination on the basis of its abundance in three cellular conditions. Its solution structure has been determined using multidimensional heteronuclear NMR spectroscopy. TGAM_1934 displays an original fold, although sharing some similarities with the 3D structure of the bacterial ortholog of frataxin, CyaY, a protein conserved in bacteria and eukaryotes and involved in iron-sulfur cluster biogenesis. These results highlight the potential of structural proteomics in prioritizing ORFan targets for structure determination based on quantitative proteomics data. The proteomic data and structure coordinates have been deposited to the ProteomeXchange with identifier PXD000402 (http://proteomecentral.proteomexchange.org/dataset/PXD000402) and Protein Data Bank under the accession number 2mcf, respectively.
		+
		+	Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans.,Yang YS, Fernandez B, Lagorce A, Aloin V, De Guillen KM, Boyer JB, Dedieu A, Confalonieri F, Armengaud J, Roumestand C Proteomics. 2015 Jan;15(1):114-23. doi: 10.1002/pmic.201300535. PMID:25359407<ref>PMID:25359407</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2mcf" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:09, 11 September 2015

OCA — Fri, 11 Sep 2015 07:09:13 GMT

←Older revision		Revision as of 07:09, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://pdbe.org/2mcf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__

OCA at 13:02, 25 December 2014

OCA — Thu, 25 Dec 2014 13:02:40 GMT

←Older revision		Revision as of 13:02, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>
-	<table>	+	</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Guillen, K Montet de.]]	+	[[Category: Guillen, K Montet de]]
-	[[Category: Roumestand, C.]]	+	[[Category: Roumestand, C]]
-	[[Category: Yang, Y.]]	+	[[Category: Yang, Y]]
	[[Category: Tgam]]		[[Category: Tgam]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 05:58, 4 September 2014

OCA — Thu, 04 Sep 2014 05:58:55 GMT

←Older revision		Revision as of 05:58, 4 September 2014
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==NMR structure of Tgam==
-		+	<StructureSection load='2mcf' size='340' side='right' caption='[[2mcf]], [[NMR_Ensembles_of_Models \| 15 NMR models]]' scene=''>
-	~~The entry~~ 2mcf is ~~ON HOLD until Paper Publication~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2mcf]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MCF FirstGlance]. <br>
-	~~Authors~~: ~~Yang~~, Y., ~~Montet de~~ Guillen, K., Roumestand, C.	+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mcf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mcf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mcf RCSB], [http://www.ebi.ac.uk/pdbsum/2mcf PDBsum]</span></td></tr>
-		+	<table>
-	~~Description~~: ~~NMR structure of~~ Tgam	+	__TOC__
		+	</StructureSection>
		+	[[Category: Guillen, K Montet de.]]
		+	[[Category: Roumestand, C.]]
		+	[[Category: Yang, Y.]]
		+	[[Category: Tgam]]
		+	[[Category: Unknown function]]

OCA at 11:28, 12 March 2014

OCA — Wed, 12 Mar 2014 11:28:46 GMT

←Older revision		Revision as of 11:28, 12 March 2014
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2mcf is ON HOLD	+	The entry 2mcf is ON HOLD until Paper Publication

	Authors: Yang, Y., Montet de Guillen, K., Roumestand, C.		Authors: Yang, Y., Montet de Guillen, K., Roumestand, C.

	Description: NMR structure of Tgam		Description: NMR structure of Tgam

OCA: Protected "2mcf" [edit=sysop:move=sysop]

OCA — Wed, 28 Aug 2013 06:12:17 GMT

Protected "2mcf" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:12, 28 August 2013

OCA: New page: '''Unreleased structure''' The entry 2mcf is ON HOLD Authors: Yang, Y., Montet de Guillen, K., Roumestand, C. Description: NMR structure of Tgam

OCA — Wed, 28 Aug 2013 06:12:16 GMT

New page: '''Unreleased structure''' The entry 2mcf is ON HOLD Authors: Yang, Y., Montet de Guillen, K., Roumestand, C. Description: NMR structure of Tgam

New page

'''Unreleased structure'''

The entry 2mcf is ON HOLD

Authors: Yang, Y., Montet de Guillen, K., Roumestand, C.

Description: NMR structure of Tgam