2mw2 - Revision history

OCA at 07:02, 1 May 2024

OCA — Wed, 01 May 2024 07:02:33 GMT

←Older revision		Revision as of 07:02, 1 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [https://pdbe.org/2mw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [https://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [https://pdbe.org/2mw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [https://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref>		[https://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The Hha/YmoA nucleoid-associated proteins help selectively silence horizontally acquired genetic material, including pathogenicity and antibiotic resistance genes and their maintenance in the absence of selective pressure. Members of the Hha family contribute to gene silencing by binding to the N-terminal dimerization domain of H-NS and modifying its selectivity. Hha-like proteins and the H-NS N-terminal domain are unusually rich in charged residues, and their interaction is mostly electrostatic-driven but, nonetheless, highly selective. The NMR-based structural model of the complex between Hha/YmoA and the H-NS N-terminal dimerization domain reveals that the origin of the selectivity is the formation of a three-protein charge zipper with interdigitated complementary charged residues from Hha and the two units of the H-NS dimer. The free form of YmoA shows collective microsecond-millisecond dynamics that can by measured by NMR relaxation dispersion experiments and shows a linear dependence with the salt concentration. The number of residues sensing the collective dynamics and the population of the minor form increased in the presence of H-NS. Additionally, a single residue mutation in YmoA (D43N) abolished H-NS binding and the dynamics of the apo-form, suggesting the dynamics and binding are functionally related.
-
-	A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing.,Cordeiro TN, Garcia J, Bernado P, Millet O, Pons M J Biol Chem. 2015 Aug 28;290(35):21200-12. doi: 10.1074/jbc.M114.630400. Epub, 2015 Jun 17. PMID:26085102<ref>PMID:26085102</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2mw2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:08, 8 March 2023

OCA — Wed, 08 Mar 2023 08:08:52 GMT

←Older revision		Revision as of 08:08, 8 March 2023
Line 1:		Line 1:

	==Hha-H-NS46 charge zipper complex==		==Hha-H-NS46 charge zipper complex==
-	<StructureSection load='2mw2' size='340' side='right'caption='[[2mw2~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='2mw2' size='340' side='right'caption='[[2mw2]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1jw2\|1jw2]], [[1ni8\|1ni8]]</div></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [https://pdbe.org/2mw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [https://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hha, b0460, JW0449 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI]), hns, bglY, cur, drdX, hnsA, msyA, osmZ, pilG, topS, b1237, JW1225 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [https://pdbe.org/2mw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [https://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[https://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>	+	[https://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bernado, P]]	+	[[Category: Bernado P]]
-	[[Category: Cordeiro~~, T N~~]]	+	[[Category: Cordeiro TN]]
-	[[Category: Garcia, J]]	+	[[Category: Garcia J]]
-	[[Category: Millet, O]]	+	[[Category: Millet O]]
-	[[Category: Pons, M]]	+	[[Category: Pons M]]
-	~~[[Category: Charge-zipper complex]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Electrostatic-driven function]]~~	+
-	~~[[Category: Nucleoid-associated protein]]~~	+
-	~~[[Category: Salt-dependent dynamic~~]]	+

OCA at 15:22, 2 June 2021

OCA — Wed, 02 Jun 2021 15:22:09 GMT

←Older revision		Revision as of 15:22, 2 June 2021
Line 1:		Line 1:

	==Hha-H-NS46 charge zipper complex==		==Hha-H-NS46 charge zipper complex==
-	<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='2mw2' size='340' side='right'caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1jw2\|1jw2]], [[1ni8\|1ni8]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hha, b0460, JW0449 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI]), hns, bglY, cur, drdX, hnsA, msyA, osmZ, pilG, topS, b1237, JW1225 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hha, b0460, JW0449 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI]), hns, bglY, cur, drdX, hnsA, msyA, osmZ, pilG, topS, b1237, JW1225 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [~~http~~://pdbe.org/2mw2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [https://pdbe.org/2mw2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [https://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[~~http~~://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>	+	[[https://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[https://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Ecoli]]		[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Bernado, P]]		[[Category: Bernado, P]]
	[[Category: Cordeiro, T N]]		[[Category: Cordeiro, T N]]

OCA at 08:35, 10 January 2018

OCA — Wed, 10 Jan 2018 08:35:55 GMT

←Older revision		Revision as of 08:35, 10 January 2018
Line 3:		Line 3:
	<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [http://pdbe.org/2mw2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [http://www.ebi.ac.uk/pdbsum/2mw2 PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hha, b0460, JW0449 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI]), hns, bglY, cur, drdX, hnsA, msyA, osmZ, pilG, topS, b1237, JW1225 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [http://pdbe.org/2mw2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [http://www.ebi.ac.uk/pdbsum/2mw2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2mw2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[http://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>		[[http://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[http://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The Hha/YmoA nucleoid-associated proteins help selectively silence horizontally acquired genetic material, including pathogenicity and antibiotic resistance genes and their maintenance in the absence of selective pressure. Members of the Hha family contribute to gene silencing by binding to the N-terminal dimerization domain of H-NS and modifying its selectivity. Hha-like proteins and the H-NS N-terminal domain are unusually rich in charged residues, and their interaction is mostly electrostatic-driven but, nonetheless, highly selective. The NMR-based structural model of the complex between Hha/YmoA and the H-NS N-terminal dimerization domain reveals that the origin of the selectivity is the formation of a three-protein charge zipper with interdigitated complementary charged residues from Hha and the two units of the H-NS dimer. The free form of YmoA shows collective microsecond-millisecond dynamics that can by measured by NMR relaxation dispersion experiments and shows a linear dependence with the salt concentration. The number of residues sensing the collective dynamics and the population of the minor form increased in the presence of H-NS. Additionally, a single residue mutation in YmoA (D43N) abolished H-NS binding and the dynamics of the apo-form, suggesting the dynamics and binding are functionally related.
		+
		+	A Three-protein Charge Zipper Stabilizes a Complex Modulating Bacterial Gene Silencing.,Cordeiro TN, Garcia J, Bernado P, Millet O, Pons M J Biol Chem. 2015 Aug 28;290(35):21200-12. doi: 10.1074/jbc.M114.630400. Epub, 2015 Jun 17. PMID:26085102<ref>PMID:26085102</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2mw2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ecoli]]
	[[Category: Bernado, P]]		[[Category: Bernado, P]]
	[[Category: Cordeiro, T N]]		[[Category: Cordeiro, T N]]

OCA at 18:27, 10 May 2016

OCA — Tue, 10 May 2016 18:27:09 GMT

←Older revision		Revision as of 18:27, 10 May 2016
Line 1:		Line 1:
		+
	==Hha-H-NS46 charge zipper complex==		==Hha-H-NS46 charge zipper complex==
	<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [http://www.ebi.ac.uk/pdbsum/2mw2 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [http://pdbe.org/2mw2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [http://www.ebi.ac.uk/pdbsum/2mw2 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 14:45, 29 July 2015

OCA — Wed, 29 Jul 2015 14:45:18 GMT

←Older revision		Revision as of 14:45, 29 July 2015
Line 1:		Line 1:
-	'''~~Unreleased structure~~'''	+	==Hha-H-NS46 charge zipper complex==
-		+	<StructureSection load='2mw2' size='340' side='right' caption='[[2mw2]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
-	~~The entry~~ 2mw2 is ~~ON HOLD~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2mw2]] is a 3 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MW2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MW2 FirstGlance]. <br>
-	~~Authors~~: ~~Cordeiro~~, T.N., ~~Garcia~~, J., ~~Bernado~~, P., ~~Millet~~, O., ~~Pons~~, M.	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jw2\|1jw2]], [[1ni8\|1ni8]]</td></tr>
-		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mw2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mw2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mw2 RCSB], [http://www.ebi.ac.uk/pdbsum/2mw2 PDBsum]</span></td></tr>
-	~~Description~~: ~~Hha-H-NS46 charge zipper complex~~	+	</table>
-	[[Category: ~~Unreleased Structures~~]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HHA_ECOLI HHA_ECOLI]] Down-regulates hemolysin production and can also stimulate transposition events in vivo. Binds DNA and influences DNA topology in response to environmental stimuli. Involved in persister cell formation, acting downstream of mRNA interferase (toxin) MqsR. Decreases biofilm formation by repressing the transcription of fimbrial genes fimA and ihfA, and by repressing the transcription of tRNAs corresponding to rare codons, which are abundant in type 1 fimbrial genes.<ref>PMID:1956303</ref> <ref>PMID:16317765</ref> <ref>PMID:18545668</ref> <ref>PMID:19909729</ref> [[http://www.uniprot.org/uniprot/HNS_ECOLI HNS_ECOLI]] A DNA-binding protein implicated in transcriptional repression (silencing) as well as in bacterial chromosome organization. H-NS binds tightly to AT-rich dsDNA, increases its thermal stability and inhibits transcription. Also binds to ssDNA and RNA but with a much lower affinity. H-NS has possible histone-like function. May be a global transcriptional regulator through its ability to bind to curved DNA sequences, which are found in regions upstream of a certain subset of promoters. Plays a role in the thermal control of pili and adhesive curli fimbriae production, by inducing transcription of csgD. Represses the CRISPR-cas promoters, permits only weak transcription of the crRNA precursor; its role is antagonized by LeuO. Subject to transcriptional auto-repression. Binds preferentially to the upstream region of its own gene recognizing two segments of DNA on both sides of a bend centered around -150.<ref>PMID:7934818</ref> <ref>PMID:11031114</ref> <ref>PMID:17010156</ref> <ref>PMID:20659289</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bernado, P]]
		+	[[Category: Cordeiro, T N]]
		+	[[Category: Garcia, J]]
	[[Category: Millet, O]]		[[Category: Millet, O]]
	[[Category: Pons, M]]		[[Category: Pons, M]]
-	[[Category: ~~Cordeiro, T.N~~]]	+	[[Category: Charge-zipper complex]]
-	[[Category: ~~Garcia, J~~]]	+	[[Category: Dna binding protein]]
-	[[Category: ~~Bernado, P~~]]	+	[[Category: Electrostatic-driven function]]
		+	[[Category: Nucleoid-associated protein]]
		+	[[Category: Salt-dependent dynamic]]

OCA at 12:31, 24 December 2014

OCA — Wed, 24 Dec 2014 12:31:15 GMT

←Older revision		Revision as of 12:31, 24 December 2014
Line 6:		Line 6:

	Description: Hha-H-NS46 charge zipper complex		Description: Hha-H-NS46 charge zipper complex
		+	[[Category: Unreleased Structures]]
		+	[[Category: Millet, O]]
		+	[[Category: Pons, M]]
		+	[[Category: Cordeiro, T.N]]
		+	[[Category: Garcia, J]]
		+	[[Category: Bernado, P]]

OCA: Protected "2mw2" [edit=sysop:move=sysop]

OCA — Wed, 05 Nov 2014 07:13:24 GMT

Protected "2mw2" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:13, 5 November 2014

OCA: New page: '''Unreleased structure''' The entry 2mw2 is ON HOLD Authors: Cordeiro, T.N., Garcia, J., Bernado, P., Millet, O., Pons, M. Description: Hha-H-NS46 charge zipper complex

OCA — Wed, 05 Nov 2014 07:13:23 GMT

New page: '''Unreleased structure''' The entry 2mw2 is ON HOLD Authors: Cordeiro, T.N., Garcia, J., Bernado, P., Millet, O., Pons, M. Description: Hha-H-NS46 charge zipper complex

New page

'''Unreleased structure'''

The entry 2mw2 is ON HOLD

Authors: Cordeiro, T.N., Garcia, J., Bernado, P., Millet, O., Pons, M.

Description: Hha-H-NS46 charge zipper complex