2nbh - Revision history

OCA at 10:00, 14 June 2023

OCA — Wed, 14 Jun 2023 10:00:21 GMT

←Older revision		Revision as of 10:00, 14 June 2023
Line 1:		Line 1:

	==Solution structure of the HYD1 hydrophobin from Schizophyllum commune==		==Solution structure of the HYD1 hydrophobin from Schizophyllum commune==
-	<StructureSection load='2nbh' size='340' side='right'caption='[[2nbh~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2nbh' size='340' side='right'caption='[[2nbh]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Schcm Schcm~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schizophyllum_commune_H4-8 Schizophyllum commune H4-8]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBH FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [https://pdbe.org/2nbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [https://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [https://pdbe.org/2nbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [https://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D8QCG9_SCHCM D8QCG9_SCHCM]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Schcm~~]]	+	[[Category: Schizophyllum commune H4-8]]
-	[[Category: Grondin, J]]	+	[[Category: Grondin J]]
-	[[Category: Langelaan, D]]	+	[[Category: Langelaan D]]
-	[[Category: Smith, S]]	+	[[Category: Smith S]]
-	~~[[Category: Protein fibril~~]]	+

OCA at 16:37, 6 July 2022

OCA — Wed, 06 Jul 2022 16:37:20 GMT

←Older revision		Revision as of 16:37, 6 July 2022
Line 3:		Line 3:
	<StructureSection load='2nbh' size='340' side='right'caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2nbh' size='340' side='right'caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Schcm Schcm]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2NBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Schcm Schcm]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NBH FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [~~http~~://pdbe.org/2nbh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [https://pdbe.org/2nbh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [https://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:16, 30 September 2020

OCA — Wed, 30 Sep 2020 07:16:10 GMT

←Older revision		Revision as of 07:16, 30 September 2020
Line 1:		Line 1:

	==Solution structure of the HYD1 hydrophobin from Schizophyllum commune==		==Solution structure of the HYD1 hydrophobin from Schizophyllum commune==
-	<StructureSection load='2nbh' size='340' side='right' caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2nbh' size='340' side='right'caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schcm Schcm]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2NBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schcm Schcm]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2NBH FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [http://pdbe.org/2nbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [http://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [http://pdbe.org/2nbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [http://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Class I hydrophobins are functional amyloids secreted by fungi. They self-assemble into organized films at interfaces producing structures that include cellular adhesion points and hydrophobic coatings. Here, we present the first structure and solution properties of a unique Class I protein sequence of Basidiomycota origin: the Schizophyllum commune hydrophobin SC16 (hyd1). While the core beta-barrel structure and disulphide bridging characteristic of the hydrophobin family are conserved, its surface properties and secondary structure elements are reminiscent of both Class I and II hydrophobins. Sequence analyses of hydrophobins from 215 fungal species suggest this structure is largely applicable to a high-identity Basidiomycota Class I subdivision (IB). To validate this prediction, structural analysis of a comparatively distinct Class IB sequence from a different fungal order, namely the Phanerochaete carnosa PcaHyd1, indicates secondary structure properties similar to that of SC16. Together, these results form an experimental basis for a high-identity Class I subdivision and contribute to our understanding of functional amyloid formation.
		+
		+	Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision.,Gandier JA, Langelaan DN, Won A, O'Donnell K, Grondin JL, Spencer HL, Wong P, Tillier E, Yip C, Smith SP, Master ER Sci Rep. 2017 Apr 10;7:45863. doi: 10.1038/srep45863. PMID:28393921<ref>PMID:28393921</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2nbh" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Schcm]]		[[Category: Schcm]]
	[[Category: Grondin, J]]		[[Category: Grondin, J]]

OCA at 17:33, 15 August 2018

OCA — Wed, 15 Aug 2018 17:33:39 GMT

←Older revision		Revision as of 17:33, 15 August 2018
Line 3:		Line 3:
	<StructureSection load='2nbh' size='340' side='right' caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2nbh' size='340' side='right' caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Schcm Schcm]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [http://pdbe.org/2nbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [http://www.ebi.ac.uk/pdbsum/2nbh PDBsum]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HYD1, SCHCODRAFT_58269 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=578458 SCHCM])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [http://pdbe.org/2nbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [http://www.ebi.ac.uk/pdbsum/2nbh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nbh ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Schcm]]
	[[Category: Grondin, J]]		[[Category: Grondin, J]]
	[[Category: Langelaan, D]]		[[Category: Langelaan, D]]
	[[Category: Smith, S]]		[[Category: Smith, S]]
	[[Category: Protein fibril]]		[[Category: Protein fibril]]

OCA at 03:42, 11 May 2016

OCA — Wed, 11 May 2016 03:42:28 GMT

←Older revision		Revision as of 03:42, 11 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 2nbh ~~is ON HOLD~~	+	==Solution structure of the HYD1 hydrophobin from Schizophyllum commune==
-		+	<StructureSection load='2nbh' size='340' side='right' caption='[[2nbh]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~Authors~~: ~~Langelaan~~, D., ~~Smith~~, S., ~~Grondin, J~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2nbh]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NBH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NBH FirstGlance]. <br>
-	~~Description: Solution structure of the HYD1 hydrophobin from Schizophyllum commune~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nbh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nbh OCA], [http://pdbe.org/2nbh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nbh RCSB], [http://www.ebi.ac.uk/pdbsum/2nbh PDBsum]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Grondin, J]]
	[[Category: Langelaan, D]]		[[Category: Langelaan, D]]
-	[[Category: Grondin, J]]
	[[Category: Smith, S]]		[[Category: Smith, S]]
		+	[[Category: Protein fibril]]

OCA: Protected "2nbh" [edit=sysop:move=sysop]

OCA — Wed, 02 Mar 2016 07:26:44 GMT

Protected "2nbh" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:26, 2 March 2016

OCA: New page: '''Unreleased structure''' The entry 2nbh is ON HOLD Authors: Langelaan, D., Smith, S., Grondin, J. Description: Solution structure of the HYD1 hydrophobin from Schizophyllum commune [...

OCA — Wed, 02 Mar 2016 07:26:43 GMT

New page: '''Unreleased structure''' The entry 2nbh is ON HOLD Authors: Langelaan, D., Smith, S., Grondin, J. Description: Solution structure of the HYD1 hydrophobin from Schizophyllum commune [...

New page

'''Unreleased structure'''

The entry 2nbh is ON HOLD

Authors: Langelaan, D., Smith, S., Grondin, J.

Description: Solution structure of the HYD1 hydrophobin from Schizophyllum commune
[[Category: Unreleased Structures]]
[[Category: Langelaan, D]]
[[Category: Grondin, J]]
[[Category: Smith, S]]