2ndn - Revision history

OCA at 10:01, 14 June 2023

OCA — Wed, 14 Jun 2023 10:01:40 GMT

←Older revision		Revision as of 10:01, 14 June 2023
Line 1:		Line 1:

	==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==		==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==
-	<StructureSection load='2ndn' size='340' side='right'caption='[[2ndn~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2ndn' size='340' side='right'caption='[[2ndn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NDN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Zinnia_haageana Zinnia haageana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NDN FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ndl\|2ndl]], [[2ndm\|2ndm]]</div></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [https://pdbe.org/2ndn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [https://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [https://pdbe.org/2ndn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [https://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0A0V2B6_9ASTR A0A0A0V2B6_9ASTR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fisher~~, M F~~]]	+	[[Category: Zinnia haageana]]
-	[[Category: Franke, B]]	+	[[Category: Fisher MF]]
-	[[Category: Jayasena~~, A S~~]]	+	[[Category: Franke B]]
-	[[Category: Mylne~~, J S~~]]	+	[[Category: Jayasena AS]]
-	[[Category: Rosengren, K]]	+	[[Category: Mylne JS]]
-	[[Category: Swedberg~~, J E~~]]	+	[[Category: Rosengren K]]
-	[[Category: Taylor~~, N L]]~~	+	[[Category: Swedberg JE]]
-	~~[[Category: Cyclic peptide]]~~	+	[[Category: Taylor NL]]
-	~~[[Category: Paws derived peptide]]~~	+
-	~~[[Category: Pdp]]~~	+
-	~~[[Category: Plant peptide]]~~	+
-	~~[[Category: Plant protein~~]]	+

OCA at 12:24, 23 March 2022

OCA — Wed, 23 Mar 2022 12:24:19 GMT

←Older revision		Revision as of 12:24, 23 March 2022
Line 3:		Line 3:
	<StructureSection load='2ndn' size='340' side='right'caption='[[2ndn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2ndn' size='340' side='right'caption='[[2ndn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2NDN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NDN FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ndl\|2ndl]], [[2ndm\|2ndm]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ndl\|2ndl]], [[2ndm\|2ndm]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [~~http~~://pdbe.org/2ndn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [https://pdbe.org/2ndn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [https://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:03, 17 June 2020

OCA — Wed, 17 Jun 2020 11:03:06 GMT

←Older revision		Revision as of 11:03, 17 June 2020
Line 1:		Line 1:

	==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==		==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==
-	<StructureSection load='2ndn' size='340' side='right' caption='[[2ndn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2ndn' size='340' side='right'caption='[[2ndn]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2NDN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2NDN FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ndl\|2ndl]], [[2ndm\|2ndm]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ndl\|2ndl]], [[2ndm\|2ndm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [http://pdbe.org/2ndn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [http://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [http://pdbe.org/2ndn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [http://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Fisher, M F]]		[[Category: Fisher, M F]]
	[[Category: Franke, B]]		[[Category: Franke, B]]

OCA at 19:39, 9 December 2016

OCA — Fri, 09 Dec 2016 19:39:50 GMT

←Older revision		Revision as of 19:39, 9 December 2016
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [http://pdbe.org/2ndn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [http://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [http://pdbe.org/2ndn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [http://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A new family of small plant peptides was recently described and found to be widespread throughout the Millereae and Heliantheae tribes of the sunflower family Asteraceae. These peptides originate from the post-translational processing of unusual seed-storage albumin genes, and have been termed PawS-derived peptides (PDPs). The prototypic family member is a 14-residue cyclic peptide with potent trypsin inhibitory activity named SunFlower Trypsin Inhibitor (SFTI-1). In this study we present the features of three new PDPs discovered in the seeds of the sunflower species Zinnia haageana by a combination of de novo transcriptomics and liquid chromatography-mass spectrometry. Two-dimensional solution NMR spectroscopy was used to elucidate their structural characteristics. All three Z. haageana peptides have well-defined folds with a head-to-tail cyclized peptide backbone and a single disulfide bond. Although two possess an anti-parallel beta-sheet structure, like SFTI-1, the Z. haageana peptide PDP-21 has a more irregular backbone structure. Despite structural similarities with SFTI-1, PDP-20 was not able to inhibit trypsin, thus the functional roles of these peptides is yet to be discovered. Defining the structural features of the small cyclic peptides found in the sunflower family will be useful for guiding the exploitation of these peptides as scaffolds for grafting and protein engineering applications.
		+
		+	Diverse cyclic seed peptides in the Mexican zinnia (Zinnia haageana).,Franke B, Jayasena AS, Fisher MF, Swedberg JE, Taylor NL, Mylne JS, Rosengren KJ Biopolymers. 2016 Nov;106(6):806-817. doi: 10.1002/bip.22901. PMID:27352920<ref>PMID:27352920</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2ndn" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA: Protected "2ndn" [edit=sysop:move=sysop]

OCA — Sat, 10 Sep 2016 06:48:41 GMT

Protected "2ndn" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:48, 10 September 2016

OCA: New page: ==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==
OCA — Sat, 10 Sep 2016 06:48:37 GMT

New page: ==NMR solution structure of PawS Derived Peptide 20 (PDP-20)== <StructureSection load='2ndn' size='340' side='right' caption='2ndn, 20 NMR models' scene=...

New page

==NMR solution structure of PawS Derived Peptide 20 (PDP-20)==
<StructureSection load='2ndn' size='340' side='right' caption='[[2ndn]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[2ndn]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NDN FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ndl|2ndl]], [[2ndm|2ndm]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ndn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ndn OCA], [http://pdbe.org/2ndn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ndn RCSB], [http://www.ebi.ac.uk/pdbsum/2ndn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ndn ProSAT]</span></td></tr>
</table>
TOC
</StructureSection>
[[Category: Fisher, M F]]
[[Category: Franke, B]]
[[Category: Jayasena, A S]]
[[Category: Mylne, J S]]
[[Category: Rosengren, K]]
[[Category: Swedberg, J E]]
[[Category: Taylor, N L]]
[[Category: Cyclic peptide]]
[[Category: Paws derived peptide]]
[[Category: Pdp]]
[[Category: Plant peptide]]
[[Category: Plant protein]]