2nrj - Revision history

OCA at 00:10, 28 December 2023

OCA — Thu, 28 Dec 2023 00:10:19 GMT

←Older revision		Revision as of 00:10, 28 December 2023
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	==Crystal Structure of Hemolysin binding component from Bacillus cereus==		==Crystal Structure of Hemolysin binding component from Bacillus cereus==
-	<StructureSection load='2nrj' size='340' side='right'caption='[[2nrj]]' scene=''>	+	<StructureSection load='2nrj' size='340' side='right'caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [https://pdbe.org/2nrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [https://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nrj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.03Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [https://pdbe.org/2nrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [https://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nrj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/HBLA_BACCE HBLA_BACCE] Cytotoxic protein, part of the enterotoxin complex. Responsible for binding to erythrocytes. This enterotoxin is thought to be the cause of the diarrheal form of gastroenteritis caused by food-borne strains of B.cereus.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nrj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacillus cereus Hemolysin BL enterotoxin, a ternary complex of three proteins, is the causative agent of food poisoning and requires all three components for virulence. The X-ray structure of the binding domain of HBL suggests that it may form a pore similar to other soluble channel forming proteins. A putative pathway of pore formation is discussed.
		+
		+	X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus.,Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S Proteins. 2008 May 1;71(2):534-40. PMID:18175317<ref>PMID:18175317</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2nrj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Hemolysin 3D structures\|Hemolysin 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus cereus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Burley SK]]		[[Category: Burley SK]]

OCA at 15:49, 8 June 2021

OCA — Tue, 08 Jun 2021 15:49:22 GMT

←Older revision		Revision as of 15:49, 8 June 2021
Line 1:		Line 1:

	==Crystal Structure of Hemolysin binding component from Bacillus cereus==		==Crystal Structure of Hemolysin binding component from Bacillus cereus==
-	<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]]~~, [[Resolution\|resolution]] 2.03Å~~' scene=''>	+	<StructureSection load='2nrj' size='340' side='right'caption='[[2nrj]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14579 Atcc 14579].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>
-	</td></tr>~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [https://pdbe.org/2nrj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [https://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nrj ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>~~	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [~~http~~://pdbe.org/2nrj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2nrj ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 18:		Line 16:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nrj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Bacillus cereus Hemolysin BL enterotoxin, a ternary complex of three proteins, is the causative agent of food poisoning and requires all three components for virulence. The X-ray structure of the binding domain of HBL suggests that it may form a pore similar to other soluble channel forming proteins. A putative pathway of pore formation is discussed.
-
-	X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus.,Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S Proteins. 2008 May 1;71(2):534-40. PMID:18175317<ref>PMID:18175317</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2nrj" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 14579~~]]	+	[[Category: Large Structures]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Eswaramoorthy, S]]	+	[[Category: Eswaramoorthy S]]
-	[[Category: Madegowda, M]]	+	[[Category: Madegowda M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Swaminathan S]]
-	[[Category: Swaminathan, S]]	+
-	~~[[Category: Enterotoxin]]~~	+
-	~~[[Category: Hemolysis]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Toxin]]~~	+
-	~~[[Category: Transmembrane~~]]	+

OCA at 17:05, 15 August 2018

OCA — Wed, 15 Aug 2018 17:05:05 GMT

←Older revision		Revision as of 17:05, 15 August 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Hemolysin binding component from Bacillus cereus==		==Crystal Structure of Hemolysin binding component from Bacillus cereus==
	<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>		<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://pdbe.org/2nrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://pdbe.org/2nrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nrj ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nr/2nrj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nr/2nrj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:53, 9 February 2016

OCA — Tue, 09 Feb 2016 14:53:23 GMT

←Older revision		Revision as of 14:53, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nrj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:19, 10 September 2015

OCA — Thu, 10 Sep 2015 23:19:57 GMT

←Older revision		Revision as of 23:19, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>		<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_cereus Bacillus cereus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_14579 Atcc 14579]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ~~Bacillus cereus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 ATCC 14579])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://pdbe.org/2nrj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2nrj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus cereus~~]]	+	[[Category: Atcc 14579]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Eswaramoorthy, S]]		[[Category: Eswaramoorthy, S]]

OCA at 13:25, 6 November 2014

OCA — Thu, 06 Nov 2014 13:25:22 GMT

←Older revision		Revision as of 13:25, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Eswaramoorthy, S.]]	+	[[Category: Eswaramoorthy, S]]
-	[[Category: Madegowda, M.]]	+	[[Category: Madegowda, M]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Swaminathan, S.]]	+	[[Category: Swaminathan, S]]
	[[Category: Enterotoxin]]		[[Category: Enterotoxin]]
	[[Category: Hemolysis]]		[[Category: Hemolysis]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+	[[Category: PSI, Protein structure initiative]]
-	[[Category: Protein structure initiative]]	+
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Toxin]]		[[Category: Toxin]]
	[[Category: Transmembrane]]		[[Category: Transmembrane]]

OCA at 18:45, 30 September 2014

OCA — Tue, 30 Sep 2014 18:45:10 GMT

←Older revision		Revision as of 18:45, 30 September 2014
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-	[[~~Image:~~2nrj.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of Hemolysin binding component from Bacillus cereus==
		+	<StructureSection load='2nrj' size='340' side='right' caption='[[2nrj]], [[Resolution\|resolution]] 2.03Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NRJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">hblA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nrj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nrj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nrj RCSB], [http://www.ebi.ac.uk/pdbsum/2nrj PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2nrj TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nr/2nrj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacillus cereus Hemolysin BL enterotoxin, a ternary complex of three proteins, is the causative agent of food poisoning and requires all three components for virulence. The X-ray structure of the binding domain of HBL suggests that it may form a pore similar to other soluble channel forming proteins. A putative pathway of pore formation is discussed.

-	~~{{STRUCTURE_2nrj\| PDB=2nrj \| SCENE= }}~~	+	X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus.,Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S Proteins. 2008 May 1;71(2):534-40. PMID:18175317<ref>PMID:18175317</ref>

-	~~===Crystal Structure~~ of ~~Hemolysin binding component from Bacillus cereus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18175317}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2nrj]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_cereus Bacillus cereus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018175317<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA: Protected "2nrj" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 11:02:38 GMT

Protected "2nrj" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:02, 7 January 2013

OCA at 11:02, 7 January 2013

OCA — Mon, 07 Jan 2013 11:02:34 GMT

←Older revision		Revision as of 11:02, 7 January 2013
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-	{{Seed}}
	[[Image:2nrj.png\|left\|200px]]		[[Image:2nrj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2nrj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2nrj\| PDB=2nrj \| SCENE= }}		{{STRUCTURE_2nrj\| PDB=2nrj \| SCENE= }}

	===Crystal Structure of Hemolysin binding component from Bacillus cereus===		===Crystal Structure of Hemolysin binding component from Bacillus cereus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18175317}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18175317 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18175317}}		{{ABSTRACT_PUBMED_18175317}}

	==About this Structure==		==About this Structure==
-	~~2NRJ~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA].	+	[[2nrj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NRJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18175317~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018175317</ref><references group="xtra"/>
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Eswaramoorthy, S.]]		[[Category: Eswaramoorthy, S.]]
	[[Category: Madegowda, M.]]		[[Category: Madegowda, M.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Swaminathan, S.]]		[[Category: Swaminathan, S.]]
	[[Category: Enterotoxin]]		[[Category: Enterotoxin]]
	[[Category: Hemolysis]]		[[Category: Hemolysis]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Toxin]]
	[[Category: Transmembrane]]		[[Category: Transmembrane]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:37:40 2009''

OCA at 08:37, 17 February 2009

OCA — Tue, 17 Feb 2009 08:37:41 GMT

←Older revision		Revision as of 08:37, 17 February 2009
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	==Reference==		==Reference==
-	~~X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus., Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S, Proteins. 2008 May 1;71(2):534-40.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18175317 18175317]~~	+	<ref group="xtra">PMID:18175317</ref><references group="xtra"/>
	[[Category: Bacillus cereus]]		[[Category: Bacillus cereus]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
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	[[Category: Transmembrane]]		[[Category: Transmembrane]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 11~~:01:~~18 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:37:40 2009''