2nyi - Revision history

OCA at 00:11, 28 December 2023

OCA — Thu, 28 Dec 2023 00:11:48 GMT

←Older revision		Revision as of 00:11, 28 December 2023
Line 3:		Line 3:
	<StructureSection load='2nyi' size='340' side='right'caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2nyi' size='340' side='right'caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Galsu Galsu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NYI FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~c855_101305g34.t1(MSU_Galdi) ([https~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [https://pdbe.org/2nyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [https://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyi ProSAT], [https://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [https://pdbe.org/2nyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [https://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyi ProSAT], [https://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/J3QW32_GALSU J3QW32_GALSU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Galsu~~]]	+	[[Category: Galdieria sulphuraria]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bingman~~, C A~~]]	+	[[Category: Bingman CA]]
-	[[Category: Bitto, E]]	+	[[Category: Bitto E]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: McCoy JG]]
-	[[Category: McCoy~~, J G~~]]	+	[[Category: Phillips Jr GN]]
-	[[Category: Phillips~~, G N~~]]	+	[[Category: Wesenberg GE]]
-	[[Category: Wesenberg~~, G E]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 15:55, 8 June 2021

OCA — Tue, 08 Jun 2021 15:55:06 GMT

←Older revision		Revision as of 15:55, 8 June 2021
Line 1:		Line 1:

	==Crystal Structure of an Unknown Protein from Galdieria sulphuraria==		==Crystal Structure of an Unknown Protein from Galdieria sulphuraria==
-	<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2nyi' size='340' side='right'caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Galsu Galsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2NYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Galsu Galsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NYI FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [~~http~~://pdbe.org/2nyi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyi ProSAT], [~~http~~://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [https://pdbe.org/2nyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [https://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyi ProSAT], [https://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Galsu]]		[[Category: Galsu]]
		+	[[Category: Large Structures]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]
	[[Category: Bitto, E]]		[[Category: Bitto, E]]

OCA at 08:45, 18 October 2017

OCA — Wed, 18 Oct 2017 08:45:01 GMT

←Older revision		Revision as of 08:45, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal Structure of an Unknown Protein from Galdieria sulphuraria==		==Crystal Structure of an Unknown Protein from Galdieria sulphuraria==
	<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://pdbe.org/2nyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://pdbe.org/2nyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nyi ProSAT], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 04:13, 8 February 2016

OCA — Mon, 08 Feb 2016 04:13:04 GMT

←Older revision		Revision as of 04:13, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nyi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:44, 10 September 2015

OCA — Thu, 10 Sep 2015 07:44:36 GMT

←Older revision		Revision as of 07:44, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Galdieria_sulphuraria Galdieria sulphuraria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galsu Galsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYI FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 ~~Galdieria sulphuraria~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 GALSU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://pdbe.org/2nyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2nyi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Galdieria sulphuraria~~]]	+	[[Category: Galsu]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]
	[[Category: Bitto, E]]		[[Category: Bitto, E]]

OCA at 20:31, 24 December 2014

OCA — Wed, 24 Dec 2014 20:31:51 GMT

←Older revision		Revision as of 20:31, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 Galdieria sulphuraria])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 Galdieria sulphuraria])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Galdieria sulphuraria]]		[[Category: Galdieria sulphuraria]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: Bitto, E~~.]]~~	+	[[Category: Bitto, E]]
-	~~[[Category: CESG, Center for Eukaryotic Structural Genomics.]]~~	+
-	~~[[Category: McCoy, J G.]]~~	+
-	~~[[Category: Phillips, G N.]]~~	+
-	~~[[Category: Wesenberg, G E.]]~~	+
-	~~[[Category: Center for eukaryotic structural genomic]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: McCoy, J G]]
		+	[[Category: Phillips, G N]]
		+	[[Category: Wesenberg, G E]]
		+	[[Category: Cesg]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 10:46, 3 October 2014

OCA — Fri, 03 Oct 2014 10:46:02 GMT

←Older revision		Revision as of 10:46, 3 October 2014
Line 23:		Line 23:
	Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria.,Bitto E, Kim do J, Bingman CA, Kim HJ, Han BW, Phillips GN Jr Proteins. 2012 Aug;80(8):2105-9. doi: 10.1002/prot.24101. Epub 2012 Jun 7. PMID:22528523<ref>PMID:22528523</ref>		Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria.,Bitto E, Kim do J, Bingman CA, Kim HJ, Han BW, Phillips GN Jr Proteins. 2012 Aug;80(8):2105-9. doi: 10.1002/prot.24101. Epub 2012 Jun 7. PMID:22528523<ref>PMID:22528523</ref>

-	From ~~MEDLINEÂ®~~/~~PubMedÂ®~~, a database of the U.S. National Library of Medicine.<br>	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
	== References ==		== References ==

OCA at 10:39, 28 May 2014

OCA — Wed, 28 May 2014 10:39:35 GMT

←Older revision		Revision as of 10:39, 28 May 2014
Line 1:		Line 1:
-	[[~~Image:~~2nyi.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of an Unknown Protein from Galdieria sulphuraria==
		+	<StructureSection load='2nyi' size='340' side='right' caption='[[2nyi]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NYI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">c855_101305g34.t1(MSU_Galdi) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=130081 Galdieria sulphuraria])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nyi RCSB], [http://www.ebi.ac.uk/pdbsum/2nyi PDBsum], [http://www.topsan.org/Proteins/CESG/2nyi TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ny/2nyi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ACT domain is a structurally conserved small molecule binding domain which is mostly involved in amino acid and purine metabolism. Here, we report the crystal structure of a tandem ACT domain-containing protein (ACTP) from Galdieria sulphuraria. The two ACTP monomers in the asymmetric unit form a dimer with a non-crystallographic twofold axis in a domain-swapped manner, showing a horseshoe-like structure with a central crevice. This structure contributes to expand our knowledge on the structural diversity of ACT domain-containing proteins. Proteins 2012; (c) 2012 Wiley Periodicals, Inc.

-	~~{{STRUCTURE_2nyi\| PDB=2nyi \| SCENE= }}~~	+	Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria.,Bitto E, Kim do J, Bingman CA, Kim HJ, Han BW, Phillips GN Jr Proteins. 2012 Aug;80(8):2105-9. doi: 10.1002/prot.24101. Epub 2012 Jun 7. PMID:22528523<ref>PMID:22528523</ref>

-	~~===Crystal Structure~~ of ~~an Unknown Protein from Galdieria sulphuraria===~~	+	From MEDLINEÂ®/PubMedÂ®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_22528523}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2nyi]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:022528523<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Galdieria sulphuraria]]		[[Category: Galdieria sulphuraria]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]

OCA: Protected "2nyi" [edit=sysop:move=sysop]

OCA — Wed, 25 Jul 2012 06:23:50 GMT

Protected "2nyi" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:23, 25 July 2012

OCA at 06:23, 25 July 2012

OCA — Wed, 25 Jul 2012 06:23:48 GMT

←Older revision		Revision as of 06:23, 25 July 2012
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-	{{Seed}}
	[[Image:2nyi.png\|left\|200px]]		[[Image:2nyi.png\|left\|200px]]

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	{{STRUCTURE_2nyi\| PDB=2nyi \| SCENE= }}		{{STRUCTURE_2nyi\| PDB=2nyi \| SCENE= }}

	===Crystal Structure of an Unknown Protein from Galdieria sulphuraria===		===Crystal Structure of an Unknown Protein from Galdieria sulphuraria===

		+	{{ABSTRACT_PUBMED_22528523}}

	==About this Structure==		==About this Structure==
-	~~2NYI~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA].	+	[[2nyi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Galdieria_sulphuraria Galdieria sulphuraria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NYI OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:022528523</ref><references group="xtra"/>
	[[Category: Galdieria sulphuraria]]		[[Category: Galdieria sulphuraria]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]
	[[Category: Bitto, E.]]		[[Category: Bitto, E.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
-	[[Category: Jr., G N.Phillips.]]
	[[Category: McCoy, J G.]]		[[Category: McCoy, J G.]]
		+	[[Category: Phillips, G N.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
	[[Category: Center for eukaryotic structural genomic]]		[[Category: Center for eukaryotic structural genomic]]
Line 26:		Line 23:
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
-		+	[[Category: Structural genomic]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 18~~:~~43:37 2009''~~	+	[[Category: Unknown function]]