2o8q - Revision history

OCA at 06:47, 25 January 2023

OCA — Wed, 25 Jan 2023 06:47:27 GMT

←Older revision		Revision as of 06:47, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='2o8q' size='340' side='right'caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='2o8q' size='340' side='right'caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Burxl Burxl~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paraburkholderia_xenovorans_LB400 Paraburkholderia xenovorans LB400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:~~NICKEL+(II)+ION~~'>NI</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene>~~</td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [https://pdbe.org/2o8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [https://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8q ProSAT], [https://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [https://pdbe.org/2o8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [https://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8q ProSAT], [https://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q13HN3_PARXL Q13HN3_PARXL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Burxl]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Structural genomic]]~~	+	[[Category: Paraburkholderia xenovorans LB400]]
-	~~[[Category: Cpuin-like fold]]~~	+
-	~~[[Category: Jcsg]]~~	+
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 12:49, 9 June 2021

OCA — Wed, 09 Jun 2021 12:49:32 GMT

←Older revision		Revision as of 12:49, 9 June 2021
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION==		==CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION==
-	<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>	+	<StructureSection load='2o8q' size='340' side='right'caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Burxl Burxl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Burxl Burxl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [~~http~~://pdbe.org/2o8q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8q ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [https://pdbe.org/2o8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [https://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8q ProSAT], [https://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8q_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8q_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Burxl]]		[[Category: Burxl]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Cpuin-like fold]]		[[Category: Cpuin-like fold]]

OCA at 08:54, 18 October 2017

OCA — Wed, 18 Oct 2017 08:54:14 GMT

←Older revision		Revision as of 08:54, 18 October 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION==		==CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION==
	<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://pdbe.org/2o8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://pdbe.org/2o8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2o8q ProSAT], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 21:31, 9 February 2016

OCA — Tue, 09 Feb 2016 21:31:08 GMT

←Older revision		Revision as of 21:31, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2o8q ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 02:14, 11 September 2015

OCA — Fri, 11 Sep 2015 02:14:00 GMT

←Older revision		Revision as of 02:14, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Burkholderia_xenovorans Burkholderia xenovorans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burxl Burxl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~36873 Burkholderia xenovorans~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266265 BURXL])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://pdbe.org/2o8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Burkholderia xenovorans~~]]	+	[[Category: Burxl]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Cpuin-like fold]]		[[Category: Cpuin-like fold]]

OCA at 09:40, 25 December 2014

OCA — Thu, 25 Dec 2014 09:40:27 GMT

←Older revision		Revision as of 09:40, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36873 Burkholderia xenovorans])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36873 Burkholderia xenovorans])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Burkholderia xenovorans]]		[[Category: Burkholderia xenovorans]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
	[[Category: Cpuin-like fold]]		[[Category: Cpuin-like fold]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 18:33, 30 September 2014

OCA — Tue, 30 Sep 2014 18:33:47 GMT

←Older revision		Revision as of 18:33, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2o8q.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION==
-		+	<StructureSection load='2o8q' size='340' side='right' caption='[[2o8q]], [[Resolution\|resolution]] 1.55Å' scene=''>
-	~~{{STRUCTURE_2o8q\| PDB=2o8q \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2O8Q FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">YP_555756.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36873 Burkholderia xenovorans])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2o8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2o8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2o8q RCSB], [http://www.ebi.ac.uk/pdbsum/2o8q PDBsum], [http://www.topsan.org/Proteins/JCSG/2o8q TOPSAN]</span></td></tr>
-	[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o8/2o8q_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Burkholderia xenovorans]]		[[Category: Burkholderia xenovorans]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "2o8q" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:26:51 GMT

Protected "2o8q" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:26, 7 January 2013

OCA at 13:26, 7 January 2013

OCA — Mon, 07 Jan 2013 13:26:46 GMT

←Older revision		Revision as of 13:26, 7 January 2013
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-	{{Seed}}
	[[Image:2o8q.png\|left\|200px]]		[[Image:2o8q.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2o8q", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_2o8q\| PDB=2o8q \| SCENE= }}		{{STRUCTURE_2o8q\| PDB=2o8q \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2O8Q~~ is a 2 ~~chains~~ structure with ~~sequences~~ from [http://en.wikipedia.org/wiki/~~Burkholderia_xenovorans_lb400~~ Burkholderia xenovorans ~~lb400~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA].	+	[[2o8q]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA].
-	[[Category: Burkholderia xenovorans ~~lb400~~]]	+	[[Category: Burkholderia xenovorans]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
	[[Category: Cpuin-like fold]]		[[Category: Cpuin-like fold]]
Line 24:		Line 17:
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 11:49:26 2010''

OCA at 07:42, 28 July 2010

OCA — Wed, 28 Jul 2010 07:42:44 GMT

←Older revision		Revision as of 07:42, 28 July 2010
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	{{STRUCTURE_2o8q\| PDB=2o8q \| SCENE= }}		{{STRUCTURE_2o8q\| PDB=2o8q \| SCENE= }}

-	===~~Crystal structure of a protein with a cupin~~-~~like fold and unknown function~~ (~~YP_555756.1~~) ~~from Burkholderia xenovorans~~ LB400 at 1.55 A ~~resolution~~===	+	===CRYSTAL STRUCTURE OF A PROTEIN WITH A CUPIN-LIKE FOLD AND UNKNOWN FUNCTION (BXE_C0505) FROM BURKHOLDERIA XENOVORANS LB400 AT 1.55 A RESOLUTION===


	==About this Structure==		==About this Structure==
-	2O8Q is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/~~Burkholderia_xenovorans~~ Burkholderia xenovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA].	+	2O8Q is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Burkholderia_xenovorans_lb400 Burkholderia xenovorans lb400]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2O8Q OCA].
-	[[Category: Burkholderia xenovorans]]	+	[[Category: Burkholderia xenovorans lb400]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]
-	[[Category: ~~Hypothetical protein~~]]	+	[[Category: Cpuin-like fold]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Joint center for structural genomic]]		[[Category: Joint center for structural genomic]]
		+	[[Category: Metal binding protein]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	[[Category: Yp_555756 1]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 15~~:49:~~52 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 28 11:49:26 2010''