2oln - Revision history

OCA at 00:20, 28 December 2023

OCA — Thu, 28 Dec 2023 00:20:12 GMT

←Older revision		Revision as of 00:20, 28 December 2023
Line 3:		Line 3:
	<StructureSection load='2oln' size='340' side='right'caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='2oln' size='340' side='right'caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~As_4.1460 As 4.1460~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OLN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OLN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=6PC:PYRIDINE~~-~~2-CARBOXYLIC+ACID'>6PC</scene>~~, ~~<scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.15Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2olo\|2olo]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">nikD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [https://pdbe.org/2oln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [https://www.ebi.ac.uk/pdbsum/2oln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oln ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [https://pdbe.org/2oln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [https://www.ebi.ac.uk/pdbsum/2oln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oln ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9X9P9_STRTE Q9X9P9_STRTE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: As 4 1460]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bruckner~~, R C~~]]	+	[[Category: Streptomyces tendae]]
-	[[Category: Carrell~~, C J~~]]	+	[[Category: Bruckner RC]]
-	[[Category: Jorns~~, M S~~]]	+	[[Category: Carrell CJ]]
-	[[Category: Mathews~~, F S~~]]	+	[[Category: Jorns MS]]
-	[[Category: Venci, D]]	+	[[Category: Mathews FS]]
-	[[Category: Zhao, G]]	+	[[Category: Venci D]]
-	~~[[Category: Flavoprotein]]~~	+	[[Category: Zhao G]]
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Rossmann fold~~]]	+

OCA at 12:59, 9 June 2021

OCA — Wed, 09 Jun 2021 12:59:39 GMT

←Older revision		Revision as of 12:59, 9 June 2021
Line 1:		Line 1:

	==NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution==		==NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution==
-	<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>	+	<StructureSection load='2oln' size='340' side='right'caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/As_4.1460 As 4.1460]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OLN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/As_4.1460 As 4.1460]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OLN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2olo\|2olo]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [~~http~~://pdbe.org/2oln PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2oln PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2oln ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [https://pdbe.org/2oln PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [https://www.ebi.ac.uk/pdbsum/2oln PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oln ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: As 4 1460]]		[[Category: As 4 1460]]
		+	[[Category: Large Structures]]
	[[Category: Bruckner, R C]]		[[Category: Bruckner, R C]]
	[[Category: Carrell, C J]]		[[Category: Carrell, C J]]

OCA at 06:44, 22 August 2018

OCA — Wed, 22 Aug 2018 06:44:14 GMT

←Older revision		Revision as of 06:44, 22 August 2018
Line 1:		Line 1:
		+
	==NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution==		==NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution==
	<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://pdbe.org/2oln PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://pdbe.org/2oln PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2oln ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ol/2oln_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ol/2oln_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:48, 9 February 2016

OCA — Tue, 09 Feb 2016 08:48:51 GMT

←Older revision		Revision as of 08:48, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oln ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:35, 10 September 2015

OCA — Thu, 10 Sep 2015 20:35:49 GMT

←Older revision		Revision as of 20:35, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>		<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_tendae Streptomyces tendae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OLN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/As_4.1460 As 4.1460]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OLN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 ~~Streptomyces tendae~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 AS 4.1460])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://pdbe.org/2oln PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2oln" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptomyces tendae~~]]	+	[[Category: As 4 1460]]
	[[Category: Bruckner, R C]]		[[Category: Bruckner, R C]]
	[[Category: Carrell, C J]]		[[Category: Carrell, C J]]

OCA at 16:08, 19 January 2015

OCA — Mon, 19 Jan 2015 16:08:10 GMT

←Older revision		Revision as of 16:08, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OLN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OLN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 Streptomyces tendae])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 Streptomyces tendae])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Streptomyces tendae]]		[[Category: Streptomyces tendae]]
-	[[Category: Bruckner, R C.]]	+	[[Category: Bruckner, R C]]
-	[[Category: Carrell, C J.]]	+	[[Category: Carrell, C J]]
-	[[Category: Jorns, M S.]]	+	[[Category: Jorns, M S]]
-	[[Category: Mathews, F S.]]	+	[[Category: Mathews, F S]]
-	[[Category: Venci, D.]]	+	[[Category: Venci, D]]
-	[[Category: Zhao, G.]]	+	[[Category: Zhao, G]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Rossmann fold]]		[[Category: Rossmann fold]]

OCA at 19:09, 30 September 2014

OCA — Tue, 30 Sep 2014 19:09:09 GMT

←Older revision		Revision as of 19:09, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2oln.~~png~~\|~~left~~\|200px]]	+	==NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution==
		+	<StructureSection load='2oln' size='340' side='right' caption='[[2oln]], [[Resolution\|resolution]] 1.15Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OLN FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2olo\|2olo]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nikD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1932 Streptomyces tendae])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oln FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oln OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oln RCSB], [http://www.ebi.ac.uk/pdbsum/2oln PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ol/2oln_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	NikD is an unusual amino-acid-oxidizing enzyme that contains covalently bound FAD, catalyzes a 4-electron oxidation of piperideine-2-carboxylic acid to picolinate, and plays a critical role in the biosynthesis of nikkomycin antibiotics. Crystal structures of closed and open forms of nikD, a two-domain enzyme, have been determined to resolutions of 1.15 and 1.9 A, respectively. The two forms differ by an 11 degrees rotation of the catalytic domain with respect to the FAD-binding domain. The active site is inaccessible to solvent in the closed form; an endogenous ligand, believed to be picolinate, is bound close to and parallel with the flavin ring, an orientation compatible with redox catalysis. The active site is solvent accessible in the open form, but the picolinate ligand is approximately perpendicular to the flavin ring and a tryptophan is stacked above the flavin ring. NikD also contains a mobile cation binding loop.

-	~~{{STRUCTURE_2oln\| PDB=2oln \| SCENE= }}~~	+	NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: structures of closed and open forms at 1.15 and 1.90 A resolution.,Carrell CJ, Bruckner RC, Venci D, Zhao G, Jorns MS, Mathews FS Structure. 2007 Aug;15(8):928-41. PMID:17697998<ref>PMID:17697998</ref>

-	~~===NikD~~, ~~an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17697998}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2oln]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptomyces_tendae Streptomyces tendae]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017697998<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Streptomyces tendae]]		[[Category: Streptomyces tendae]]
	[[Category: Bruckner, R C.]]		[[Category: Bruckner, R C.]]

OCA: Protected "2oln" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 14:06:07 GMT

Protected "2oln" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:06, 7 January 2013

OCA at 14:06, 7 January 2013

OCA — Mon, 07 Jan 2013 14:06:04 GMT

←Older revision		Revision as of 14:06, 7 January 2013
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-	{{Seed}}
	[[Image:2oln.png\|left\|200px]]		[[Image:2oln.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2oln\| PDB=2oln \| SCENE= }}		{{STRUCTURE_2oln\| PDB=2oln \| SCENE= }}

	===NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution===		===NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: closed form at 1.15 A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17697998}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17697998 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17697998}}		{{ABSTRACT_PUBMED_17697998}}

	==About this Structure==		==About this Structure==
-	~~2OLN~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA].	+	[[2oln]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17697998~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017697998</ref><references group="xtra"/>
	[[Category: Streptomyces tendae]]		[[Category: Streptomyces tendae]]
	[[Category: Bruckner, R C.]]		[[Category: Bruckner, R C.]]
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	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Rossmann fold]]		[[Category: Rossmann fold]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:29:26 2009''

OCA at 06:29, 17 February 2009

OCA — Tue, 17 Feb 2009 06:29:28 GMT

←Older revision		Revision as of 06:29, 17 February 2009
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	==About this Structure==		==About this Structure==
-	2OLN is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA].	+	2OLN is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_tendae Streptomyces tendae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OLN OCA].

	==Reference==		==Reference==
-	NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: structures of closed and open forms at 1.15 and 1.90 A resolution., Carrell CJ, Bruckner RC, Venci D, Zhao G, Jorns MS, Mathews FS, Structure. 2007 Aug;15(8):928-41. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17697998 17697998]~~	+	<ref group="xtra">PMID:17697998</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Streptomyces tendae]]		[[Category: Streptomyces tendae]]
	[[Category: Bruckner, R C.]]		[[Category: Bruckner, R C.]]
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	[[Category: Rossmann fold]]		[[Category: Rossmann fold]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 11~~:54:~~47 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:29:26 2009''