2ong - Revision history

OCA at 10:44, 30 August 2023

OCA — Wed, 30 Aug 2023 10:44:22 GMT

←Older revision		Revision as of 10:44, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2ong' size='340' side='right'caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2ong' size='340' side='right'caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Mensp Mensp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ONG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2onh\|2onh]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [https://pdbe.org/2ong PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [https://www.ebi.ac.uk/pdbsum/2ong PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [https://pdbe.org/2ong PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [https://www.ebi.ac.uk/pdbsum/2ong PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q40322_MENSP Q40322_MENSP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mensp~~]]	+	[[Category: Mentha spicata]]
-	[[Category: Croteau, R]]	+	[[Category: Croteau R]]
-	[[Category: Hyatt~~, D C~~]]	+	[[Category: Hyatt DC]]
-	[[Category: Kang, C]]	+	[[Category: Kang C]]
-	[[Category: Youn, B]]	+	[[Category: Youn B]]
-	~~[[Category: Fluorogeranyl diphosphate]]~~	+
-	~~[[Category: 2-fluorolinalyl diphosphate]]~~	+
-	~~[[Category: Geranyl diphosphate]]~~	+
-	~~[[Category: Linalyl diphosphate]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Monoterpene cyclase]]~~	+
-	~~[[Category: Monoterpene synthase~~]]	+

OCA at 18:19, 20 October 2021

OCA — Wed, 20 Oct 2021 18:19:12 GMT

←Older revision		Revision as of 18:19, 20 October 2021
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	<StructureSection load='2ong' size='340' side='right'caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2ong' size='340' side='right'caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Mensp Mensp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2ONG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mensp Mensp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2onh\|2onh]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [~~http~~://pdbe.org/2ong PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ong PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [https://pdbe.org/2ong PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [https://www.ebi.ac.uk/pdbsum/2ong PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:02, 27 May 2020

OCA — Wed, 27 May 2020 08:02:33 GMT

←Older revision		Revision as of 08:02, 27 May 2020
Line 1:		Line 1:

	==Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).==		==Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).==
-	<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='2ong' size='340' side='right'caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mensp Mensp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ONG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mensp Mensp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://pdbe.org/2ong PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://pdbe.org/2ong PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Mensp]]		[[Category: Mensp]]
	[[Category: Croteau, R]]		[[Category: Croteau, R]]

OCA at 07:09, 22 August 2018

OCA — Wed, 22 Aug 2018 07:09:34 GMT

←Older revision		Revision as of 07:09, 22 August 2018
Line 1:		Line 1:
		+
	==Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).==		==Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).==
	<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://pdbe.org/2ong PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://pdbe.org/2ong PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ong ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/2ong_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/2ong_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:52, 9 February 2016

OCA — Tue, 09 Feb 2016 23:52:27 GMT

←Older revision		Revision as of 23:52, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ong ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:17, 11 September 2015

OCA — Fri, 11 Sep 2015 03:17:57 GMT

←Older revision		Revision as of 03:17, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mentha_spicata Mentha spicata~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mensp Mensp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://pdbe.org/2ong PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2ong" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mentha spicata~~]]	+	[[Category: Mensp]]
	[[Category: Croteau, R]]		[[Category: Croteau, R]]
	[[Category: Hyatt, D C]]		[[Category: Hyatt, D C]]

OCA at 16:45, 19 January 2015

OCA — Mon, 19 Jan 2015 16:45:41 GMT

←Older revision		Revision as of 16:45, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Mentha spicata]]		[[Category: Mentha spicata]]
-	[[Category: Croteau, R.]]	+	[[Category: Croteau, R]]
-	[[Category: Hyatt, D C.]]	+	[[Category: Hyatt, D C]]
-	[[Category: Kang, C.]]	+	[[Category: Kang, C]]
-	[[Category: Youn, B.]]	+	[[Category: Youn, B]]
-	[[Category: ~~2 fluorogeranyl~~ diphosphate]]	+	[[Category: Fluorogeranyl diphosphate]]
	[[Category: 2-fluorolinalyl diphosphate]]		[[Category: 2-fluorolinalyl diphosphate]]
	[[Category: Geranyl diphosphate]]		[[Category: Geranyl diphosphate]]

OCA at 19:26, 30 September 2014

OCA — Tue, 30 Sep 2014 19:26:35 GMT

←Older revision		Revision as of 19:26, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2ong.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).==
		+	<StructureSection load='2ong' size='340' side='right' caption='[[2ong]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=FPG:(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYL+TRIHYDROGEN+DIPHOSPHATE'>FPG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2onh\|2onh]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ong FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ong OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ong RCSB], [http://www.ebi.ac.uk/pdbsum/2ong PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/2ong_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of (4S)-limonene synthase from Mentha spic ata, a metal ion-dependent monoterpene cyclase that catalyzes the coupled isomerization and cyclization of geranyl diphosphate, is reported at 2.7-A; resolution in two forms liganded to the substrate and intermediate analogs, 2-fluorogeranyl diphosphate and 2-fluorolinalyl diphosphate, respectively. The implications of these findings are described for domain interactions in the homodimer and for changes in diphosphate-metal ion coordination and substrate binding conformation in the course of the multistep reaction.

-	~~{{STRUCTURE_2ong\| PDB=2ong \| SCENE= }}~~	+	Structure of limonene synthase, a simple model for terpenoid cyclase catalysis.,Hyatt DC, Youn B, Zhao Y, Santhamma B, Coates RM, Croteau RB, Kang C Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5360-5. Epub 2007 Mar 19. PMID:17372193<ref>PMID:17372193</ref>

-	~~===Crystal Structure~~ of of ~~limonene synthase with 2-fluorogeranyl diphosphate (FGPP)~~.~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17372193}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2ong]] is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017372193<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Mentha spicata]]		[[Category: Mentha spicata]]
	[[Category: Croteau, R.]]		[[Category: Croteau, R.]]

OCA: Protected "2ong" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 14:26:35 GMT

Protected "2ong" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:26, 7 January 2013

OCA at 14:26, 7 January 2013

OCA — Mon, 07 Jan 2013 14:26:32 GMT

←Older revision		Revision as of 14:26, 7 January 2013
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-	{{Seed}}
	[[Image:2ong.png\|left\|200px]]		[[Image:2ong.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2ong", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2ong\| PDB=2ong \| SCENE= }}		{{STRUCTURE_2ong\| PDB=2ong \| SCENE= }}

	===Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).===		===Crystal Structure of of limonene synthase with 2-fluorogeranyl diphosphate (FGPP).===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17372193}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17372193 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17372193}}		{{ABSTRACT_PUBMED_17372193}}

	==About this Structure==		==About this Structure==
-	~~2ONG~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA].	+	[[2ong]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mentha_spicata Mentha spicata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17372193~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017372193</ref><references group="xtra"/>
	[[Category: Mentha spicata]]		[[Category: Mentha spicata]]
	[[Category: Croteau, R.]]		[[Category: Croteau, R.]]
Line 31:		Line 19:
	[[Category: 2 fluorogeranyl diphosphate]]		[[Category: 2 fluorogeranyl diphosphate]]
	[[Category: 2-fluorolinalyl diphosphate]]		[[Category: 2-fluorolinalyl diphosphate]]
-	[[Category: Crystal structure]]
	[[Category: Geranyl diphosphate]]		[[Category: Geranyl diphosphate]]
	[[Category: Linalyl diphosphate]]		[[Category: Linalyl diphosphate]]
		+	[[Category: Lyase]]
	[[Category: Monoterpene cyclase]]		[[Category: Monoterpene cyclase]]
	[[Category: Monoterpene synthase]]		[[Category: Monoterpene synthase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 13:44:45 2009''