2otb - Revision history

OCA at 10:48, 30 August 2023

OCA — Wed, 30 Aug 2023 10:48:12 GMT

←Older revision		Revision as of 10:48, 30 August 2023
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	<StructureSection load='2otb' size='340' side='right'caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2otb' size='340' side='right'caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Brown_star_polyp Brown star polyp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=PIA:[(4Z)-2~~-[~~(1S)-1-AMINOETHYL~~]~~-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-~~1~~-YL]ACETIC+ACID'>PIA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.79Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;'>~~[~~[2ote\|2ote~~]]~~</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
-	~~<tr id='gene~~'>~~<td class="sblockLbl"><b>[[Gene\|Gene:]]~~</b>~~</td><td class="sblockDat">cFP484 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [https://pdbe.org/2otb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [https://www.ebi.ac.uk/pdbsum/2otb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [https://pdbe.org/2otb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [https://www.ebi.ac.uk/pdbsum/2otb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/GFPL_CLASP GFPL_CLASP]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Brown star polyp~~]]	+	[[Category: Clavularia sp]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Ai, H]]	+	[[Category: Ai H]]
-	[[Category: Campbell~~, R E~~]]	+	[[Category: Campbell RE]]
-	[[Category: Henderson~~, J N~~]]	+	[[Category: Henderson JN]]
-	[[Category: Remington~~, S J]]~~	+	[[Category: Remington SJ]]
-	~~[[Category: Beta can]]~~	+
-	~~[[Category: Fluorescent protein~~]]	+

OCA at 13:05, 9 June 2021

OCA — Wed, 09 Jun 2021 13:05:26 GMT

←Older revision		Revision as of 13:05, 9 June 2021
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	==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==		==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==
-	<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='2otb' size='340' side='right'caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Brown_star_polyp Brown star polyp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OTB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brown_star_polyp Brown star polyp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ote\|2ote]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [~~http~~://pdbe.org/2otb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2otb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [https://pdbe.org/2otb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [https://www.ebi.ac.uk/pdbsum/2otb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otb_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Green Fluorescent Protein 3D structures\|Green Fluorescent Protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Brown star polyp]]		[[Category: Brown star polyp]]
		+	[[Category: Large Structures]]
	[[Category: Ai, H]]		[[Category: Ai, H]]
	[[Category: Campbell, R E]]		[[Category: Campbell, R E]]

OCA at 09:08, 18 October 2017

OCA — Wed, 18 Oct 2017 09:08:30 GMT

←Older revision		Revision as of 09:08, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==		==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==
	<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://pdbe.org/2otb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://pdbe.org/2otb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2otb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 03:22, 9 February 2016

OCA — Tue, 09 Feb 2016 03:22:00 GMT

←Older revision		Revision as of 03:22, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:07, 10 September 2015

OCA — Thu, 10 Sep 2015 18:07:38 GMT

←Older revision		Revision as of 18:07, 10 September 2015
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	<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clavularia_sp. Clavularia sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Brown_star_polyp Brown star polyp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 ~~Clavularia sp.~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Brown star polyp])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://pdbe.org/2otb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2otb" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clavularia sp~~]]	+	[[Category: Brown star polyp]]
	[[Category: Ai, H]]		[[Category: Ai, H]]
	[[Category: Campbell, R E]]		[[Category: Campbell, R E]]

OCA at 04:03, 25 December 2014

OCA — Thu, 25 Dec 2014 04:03:56 GMT

←Older revision		Revision as of 04:03, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTB FirstGlance]. <br>		<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Clavularia sp.])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Clavularia sp.])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clavularia sp.]]	+	[[Category: Clavularia sp]]
-	[[Category: Ai, H.]]	+	[[Category: Ai, H]]
-	[[Category: Campbell, R E.]]	+	[[Category: Campbell, R E]]
-	[[Category: Henderson, J N.]]	+	[[Category: Henderson, J N]]
-	[[Category: Remington, S J.]]	+	[[Category: Remington, S J]]
	[[Category: Beta can]]		[[Category: Beta can]]
	[[Category: Fluorescent protein]]		[[Category: Fluorescent protein]]

OCA at 05:35, 3 October 2014

OCA — Fri, 03 Oct 2014 05:35:00 GMT

←Older revision		Revision as of 05:35, 3 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2otb.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state==
		+	<StructureSection load='2otb' size='340' side='right' caption='[[2otb]], [[Resolution\|resolution]] 1.79Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTB FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PIA:[(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC+ACID'>PIA</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ote\|2ote]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cFP484 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86521 Clavularia sp.])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otb RCSB], [http://www.ebi.ac.uk/pdbsum/2otb PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otb_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Fluorescent protein (FP) variants that can be reversibly converted between fluorescent and nonfluorescent states have proven to be a catalyst for innovation in the field of fluorescence microscopy. However, the structural basis of the process remains poorly understood. High-resolution structures of a FP derived from Clavularia in both the fluorescent and the light-induced nonfluorescent states reveal that the rapid and complete loss of fluorescence observed upon illumination with 450-nm light results from cis-trans isomerization of the chromophore. The photoinduced change in configuration from the well ordered cis isomer to the highly nonplanar and disordered trans isomer is accompanied by a dramatic rearrangement of internal side chains. Taken together, the structures provide an explanation for the loss of fluorescence upon illumination, the slow light-independent recovery, and the rapid light-induced recovery of fluorescence. The fundamental mechanism appears to be common to all of the photoactivatable and reversibly photoswitchable FPs reported to date.

-	~~{{STRUCTURE_2otb\| PDB=2otb \| SCENE= }}~~	+	Structural basis for reversible photobleaching of a green fluorescent protein homologue.,Henderson JN, Ai HW, Campbell RE, Remington SJ Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6672-7. Epub 2007 Apr 9. PMID:17420458<ref>PMID:17420458</ref>

-	~~===Crystal structure~~ of ~~a monomeric cyan fluorescent protein in~~ the ~~fluorescent state===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17420458}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2otb]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clavularia_sp~~. ~~Clavularia sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA].~~	+

	==See Also==		==See Also==
-	*[[Alyssa Marsico/Sandbox 1\|Alyssa Marsico/Sandbox 1]]
-	*[[Devon McCarthy/Sandbox 1\|Devon McCarthy/Sandbox 1]]
	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]		*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
-	*[[Sandbox104\|Sandbox104]]	+	== References ==
-	*[[User:Joanne Lau/Sandbox 5\|User:Joanne Lau/Sandbox 5]]	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:017420458<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clavularia sp.]]		[[Category: Clavularia sp.]]
	[[Category: Ai, H.]]		[[Category: Ai, H.]]

OCA at 12:28, 20 October 2012

OCA — Sat, 20 Oct 2012 12:28:11 GMT

←Older revision		Revision as of 12:28, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2otb]] is a 2 chain structure ~~of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]]~~ with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA].	+	[[2otb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clavularia_sp. Clavularia sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTB OCA].

	==See Also==		==See Also==

OCA at 08:49, 26 July 2012

OCA — Thu, 26 Jul 2012 08:49:14 GMT

←Older revision		Revision as of 08:49, 26 July 2012
Line 1:		Line 1:
	[[Image:2otb.png\|left\|200px]]		[[Image:2otb.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2otb", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2otb\| PDB=2otb \| SCENE= }}		{{STRUCTURE_2otb\| PDB=2otb \| SCENE= }}

	===Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state===		===Crystal structure of a monomeric cyan fluorescent protein in the fluorescent state===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17420458}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17420458 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17420458}}		{{ABSTRACT_PUBMED_17420458}}

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	==See Also==		==See Also==
-	*[[Alyssa Marsico/Sandbox 1]]	+	*[[Alyssa Marsico/Sandbox 1\|Alyssa Marsico/Sandbox 1]]
-	*[[Devon McCarthy/Sandbox 1]]	+	*[[Devon McCarthy/Sandbox 1\|Devon McCarthy/Sandbox 1]]
-	*[[Green Fluorescent Protein]]	+	*[[Green Fluorescent Protein\|Green Fluorescent Protein]]
-	*[[Sandbox104]]	+	*[[Sandbox104\|Sandbox104]]
-	*[[User:Joanne Lau/Sandbox 5]]	+	*[[User:Joanne Lau/Sandbox 5\|User:Joanne Lau/Sandbox 5]]

	==Reference==		==Reference==

OCA: Protected "2otb" [edit=sysop:move=sysop]

OCA — Wed, 22 Feb 2012 06:55:36 GMT

Protected "2otb" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:55, 22 February 2012