2otn - Revision history

OCA at 10:48, 30 August 2023

OCA — Wed, 30 Aug 2023 10:48:21 GMT

←Older revision		Revision as of 10:48, 30 August 2023
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	<StructureSection load='2otn' size='340' side='right'caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2otn' size='340' side='right'caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bacillus_anthracis_(strain_ames)~~ Bacillus anthracis ~~(strain ames)~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Ames Bacillus anthracis str. Ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>dapF ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=198094 Bacillus anthracis (strain Ames)])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>~~[~~https://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase~~]~~, with EC number [https://www~~.~~brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [https://pdbe.org/2otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [https://www.ebi.ac.uk/pdbsum/2otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [https://pdbe.org/2otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [https://www.ebi.ac.uk/pdbsum/2otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN]] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]	+	[https://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Diaminopimelate epimerase~~]]	+	[[Category: Bacillus anthracis str. Ames]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fukuda, K]]	+	[[Category: Fukuda K]]
-	[[Category: Jaroszewski, L]]	+	[[Category: Jaroszewski L]]
-	[[Category: Liddington~~, R C~~]]	+	[[Category: Liddington RC]]
-	[[Category: Matho~~, M H~~]]	+	[[Category: Matho MH]]
-	[[Category: Roper, D]]	+	[[Category: Roper D]]
-	[[Category: Santelli, E]]	+	[[Category: Santelli E]]
-	~~[[Category: Bacillus anthracis diaminopimelate epimerase]]~~	+
-	~~[[Category: Dap]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Lanthionine]]~~	+
-	~~[[Category: Lysine metabolism~~]]	+

OCA at 13:05, 9 June 2021

OCA — Wed, 09 Jun 2021 13:05:39 GMT

←Older revision		Revision as of 13:05, 9 June 2021
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	==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==		==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==
-	<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='2otn' size='340' side='right'caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_ames) Bacillus anthracis (strain ames)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_ames) Bacillus anthracis (strain ames)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [~~http~~://pdbe.org/2otn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2otn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [https://pdbe.org/2otn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [https://www.ebi.ac.uk/pdbsum/2otn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN]] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]	+	[[https://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN]] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Diaminopimelate epimerase]]		[[Category: Diaminopimelate epimerase]]
		+	[[Category: Large Structures]]
	[[Category: Fukuda, K]]		[[Category: Fukuda, K]]
	[[Category: Jaroszewski, L]]		[[Category: Jaroszewski, L]]

OCA at 07:09, 22 August 2018

OCA — Wed, 22 Aug 2018 07:09:02 GMT

←Older revision		Revision as of 07:09, 22 August 2018
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		+
	==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==		==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==
	<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>
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	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://pdbe.org/2otn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://pdbe.org/2otn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2otn ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:11, 9 February 2016

OCA — Tue, 09 Feb 2016 01:11:46 GMT

←Older revision		Revision as of 01:11, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 17:09, 10 September 2015

OCA — Thu, 10 Sep 2015 17:09:37 GMT

←Older revision		Revision as of 17:09, 10 September 2015
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	<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_anthracis_str._ames~~ Bacillus anthracis ~~str.~~ ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_(strain_ames) Bacillus anthracis (strain ames)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis ~~str.~~ Ames])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis (strain Ames)])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://pdbe.org/2otn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus anthracis str. ames]]
	[[Category: Diaminopimelate epimerase]]		[[Category: Diaminopimelate epimerase]]
	[[Category: Fukuda, K]]		[[Category: Fukuda, K]]

OCA at 03:24, 25 December 2014

OCA — Thu, 25 Dec 2014 03:24:52 GMT

←Older revision		Revision as of 03:24, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>		<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis str. Ames])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis str. Ames])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DAPF_BACAN DAPF_BACAN]] Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (By similarity).[HAMAP-Rule:MF_00197]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 23:
	[[Category: Bacillus anthracis str. ames]]		[[Category: Bacillus anthracis str. ames]]
	[[Category: Diaminopimelate epimerase]]		[[Category: Diaminopimelate epimerase]]
-	[[Category: Fukuda, K.]]	+	[[Category: Fukuda, K]]
-	[[Category: Jaroszewski, L.]]	+	[[Category: Jaroszewski, L]]
-	[[Category: Liddington, R C.]]	+	[[Category: Liddington, R C]]
-	[[Category: Matho, M H.]]	+	[[Category: Matho, M H]]
-	[[Category: Roper, D.]]	+	[[Category: Roper, D]]
-	[[Category: Santelli, E.]]	+	[[Category: Santelli, E]]
	[[Category: Bacillus anthracis diaminopimelate epimerase]]		[[Category: Bacillus anthracis diaminopimelate epimerase]]
	[[Category: Dap]]		[[Category: Dap]]

OCA at 18:50, 30 September 2014

OCA — Tue, 30 Sep 2014 18:50:11 GMT

←Older revision		Revision as of 18:50, 30 September 2014
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-	~~[[Image:2otn.png\|left\|200px]]~~	+	==Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis==
-		+	<StructureSection load='2otn' size='340' side='right' caption='[[2otn]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_2otn\| PDB=2otn \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OTN FirstGlance]. <br>
-	===Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dapF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198094 Bacillus anthracis str. Ames])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diaminopimelate_epimerase Diaminopimelate epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.7 5.1.1.7] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2otn RCSB], [http://www.ebi.ac.uk/pdbsum/2otn PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus anthracis str. ames]]		[[Category: Bacillus anthracis str. ames]]
	[[Category: Diaminopimelate epimerase]]		[[Category: Diaminopimelate epimerase]]

OCA: Protected "2otn" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 11:08:04 GMT

Protected "2otn" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:08, 7 January 2013

OCA at 11:08, 7 January 2013

OCA — Mon, 07 Jan 2013 11:08:01 GMT

←Older revision		Revision as of 11:08, 7 January 2013
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-	{{Seed}}
	[[Image:2otn.png\|left\|200px]]		[[Image:2otn.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2otn", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2otn\| PDB=2otn \| SCENE= }}		{{STRUCTURE_2otn\| PDB=2otn \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2OTN~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Bacillus_anthracis~~ Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA].	+	[[2otn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_anthracis_str._ames Bacillus anthracis str. ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA].
-	[[Category: Bacillus anthracis]]	+	[[Category: Bacillus anthracis str. ames]]
		+	[[Category: Diaminopimelate epimerase]]
	[[Category: Fukuda, K.]]		[[Category: Fukuda, K.]]
	[[Category: Jaroszewski, L.]]		[[Category: Jaroszewski, L.]]
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	[[Category: Santelli, E.]]		[[Category: Santelli, E.]]
	[[Category: Bacillus anthracis diaminopimelate epimerase]]		[[Category: Bacillus anthracis diaminopimelate epimerase]]
-	[[Category: Crystal structure]]
	[[Category: Dap]]		[[Category: Dap]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Lanthionine]]		[[Category: Lanthionine]]
	[[Category: Lysine metabolism]]		[[Category: Lysine metabolism]]
-	[[Category: X-ray]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:15:27 2009''

OCA at 03:15, 17 February 2009

OCA — Tue, 17 Feb 2009 03:15:28 GMT

←Older revision		Revision as of 03:15, 17 February 2009
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-	[[Image:2otn.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2otn.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2otn\| PDB=2otn \| SCENE= }}		{{STRUCTURE_2otn\| PDB=2otn \| SCENE= }}

-	~~'''~~Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis~~'''~~	+	===Crystal structure of the catalytically active form of diaminopimelate epimerase from Bacillus anthracis===


	==About this Structure==		==About this Structure==
-	2OTN is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA].	+	2OTN is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTN OCA].
	[[Category: Bacillus anthracis]]		[[Category: Bacillus anthracis]]
-	[[Category: Single protein]]
	[[Category: Fukuda, K.]]		[[Category: Fukuda, K.]]
	[[Category: Jaroszewski, L.]]		[[Category: Jaroszewski, L.]]
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	[[Category: Lysine metabolism]]		[[Category: Lysine metabolism]]
	[[Category: X-ray]]		[[Category: X-ray]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 11~~:37:~~59 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 05:15:27 2009''