2oxg - Revision history

OCA at 10:50, 30 August 2023

OCA — Wed, 30 Aug 2023 10:50:05 GMT

←Older revision		Revision as of 10:50, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2oxg' size='340' side='right'caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2oxg' size='340' side='right'caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_17741 Atcc 17741~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OXG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OXG FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=EDO:1,2~~-~~ETHANEDIOL'>EDO</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2ox5\|2ox5]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td><td class="sblockDat">soxZ ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [https://pdbe.org/2oxg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [https://www.ebi.ac.uk/pdbsum/2oxg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [https://pdbe.org/2oxg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [https://www.ebi.ac.uk/pdbsum/2oxg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9LCU8_PARDE Q9LCU8_PARDE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 17741]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Berks, B C~~]]	+	[[Category: Paracoccus denitrificans]]
-	[[Category: ~~Hemmings, A M~~]]	+	[[Category: Berks BC]]
-	[[Category: ~~Sauve, V~~]]	+	[[Category: Hemmings AM]]
-	[[Category: ~~Immunoglobulin-like beta-sandwich fold]]~~	+	[[Category: Sauve V]]
-	~~[[Category: Transport protein~~]]	+

OCA at 13:08, 9 June 2021

OCA — Wed, 09 Jun 2021 13:08:39 GMT

←Older revision		Revision as of 13:08, 9 June 2021
Line 1:		Line 1:

	==The SoxYZ Complex of Paracoccus pantotrophus==		==The SoxYZ Complex of Paracoccus pantotrophus==
-	<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='2oxg' size='340' side='right'caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2OXG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OXG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2ox5\|2ox5]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [~~http~~://pdbe.org/2oxg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2oxg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [https://pdbe.org/2oxg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [https://www.ebi.ac.uk/pdbsum/2oxg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 17741]]		[[Category: Atcc 17741]]
		+	[[Category: Large Structures]]
	[[Category: Berks, B C]]		[[Category: Berks, B C]]
	[[Category: Hemmings, A M]]		[[Category: Hemmings, A M]]

OCA at 07:08, 22 August 2018

OCA — Wed, 22 Aug 2018 07:08:13 GMT

←Older revision		Revision as of 07:08, 22 August 2018
Line 1:		Line 1:
		+
	==The SoxYZ Complex of Paracoccus pantotrophus==		==The SoxYZ Complex of Paracoccus pantotrophus==
	<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://pdbe.org/2oxg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://pdbe.org/2oxg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2oxg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2oxg_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2oxg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oxg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:43, 11 September 2015

OCA — Fri, 11 Sep 2015 10:43:46 GMT

←Older revision		Revision as of 10:43, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paracoccus_denitrificans Paracoccus denitrificans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OXG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OXG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ~~Paracoccus denitrificans~~]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ~~Paracoccus denitrificans~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 ATCC 17741])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://pdbe.org/2oxg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2oxg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Paracoccus denitrificans~~]]	+	[[Category: Atcc 17741]]
	[[Category: Berks, B C]]		[[Category: Berks, B C]]
	[[Category: Hemmings, A M]]		[[Category: Hemmings, A M]]

OCA at 13:43, 19 January 2015

OCA — Mon, 19 Jan 2015 13:43:29 GMT

←Older revision		Revision as of 13:43, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OXG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OXG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
-	[[Category: Berks, B C.]]	+	[[Category: Berks, B C]]
-	[[Category: Hemmings, A M.]]	+	[[Category: Hemmings, A M]]
-	[[Category: Sauve, V.]]	+	[[Category: Sauve, V]]
	[[Category: Immunoglobulin-like beta-sandwich fold]]		[[Category: Immunoglobulin-like beta-sandwich fold]]
	[[Category: Transport protein]]		[[Category: Transport protein]]

OCA at 18:14, 30 September 2014

OCA — Tue, 30 Sep 2014 18:14:09 GMT

←Older revision		Revision as of 18:14, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2oxg.~~png~~\|~~left~~\|200px]]	+	==The SoxYZ Complex of Paracoccus pantotrophus==
		+	<StructureSection load='2oxg' size='340' side='right' caption='[[2oxg]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OXG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ox5\|2ox5]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">soxZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans]), soxY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=266 Paracoccus denitrificans])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oxg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oxg RCSB], [http://www.ebi.ac.uk/pdbsum/2oxg PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/2oxg_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The bacterial Sox (sulfur oxidizing) system allows the utilization of inorganic sulfur compounds in energy metabolism. Central to this process is the SoxYZ complex that carries the pathway intermediates on a cysteine residue near the C terminus of SoxY. Crystal structures have been determined for Paracoccus pantotrophus SoxYZ with the carrier cysteine in the underivatized state, conjugated to the polysulfide mimic beta-mercaptoethanol, and as the sulfonate adduct pathway intermediate. The carrier cysteine is located on a peptide swinging arm and is bracketed on either side by diglycine dipeptides acting as molecular universal joints. This structure provides a novel solution to the requirement that the cysteine-bound intermediates be able to access and orient themselves within the active sites of multiple partner enzymes. Adjacent to the swinging arm there is a conserved, deep, apolar pocket into which the beta-mercaptoethanol adduct extends. This pocket would be well suited to a role in protecting labile pathway intermediates from adventitious reactions.

-	~~{{STRUCTURE_2oxg\| PDB=2oxg \| SCENE= }}~~	+	The SoxYZ complex carries sulfur cycle intermediates on a peptide swinging arm.,Sauve V, Bruno S, Berks BC, Hemmings AM J Biol Chem. 2007 Aug 10;282(32):23194-204. Epub 2007 May 23. PMID:17522046<ref>PMID:17522046</ref>

-	~~===The SoxYZ Complex~~ of ~~Paracoccus pantotrophus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17522046}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2oxg]] is a 8 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017522046<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
	[[Category: Berks, B C.]]		[[Category: Berks, B C.]]

OCA: Protected "2oxg" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 18:04:27 GMT

Protected "2oxg" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:04, 7 January 2013

OCA at 18:04, 7 January 2013

OCA — Mon, 07 Jan 2013 18:04:25 GMT

←Older revision		Revision as of 18:04, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2oxg.png\|left\|200px]]		[[Image:2oxg.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2oxg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2oxg\| PDB=2oxg \| SCENE= }}		{{STRUCTURE_2oxg\| PDB=2oxg \| SCENE= }}

	===The SoxYZ Complex of Paracoccus pantotrophus===		===The SoxYZ Complex of Paracoccus pantotrophus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17522046}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17522046 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17522046}}		{{ABSTRACT_PUBMED_17522046}}

	==About this Structure==		==About this Structure==
-	~~2OXG~~ is a 8 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA].	+	[[2oxg]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17522046~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017522046</ref><references group="xtra"/>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
	[[Category: Berks, B C.]]		[[Category: Berks, B C.]]
Line 29:		Line 17:
	[[Category: Sauve, V.]]		[[Category: Sauve, V.]]
	[[Category: Immunoglobulin-like beta-sandwich fold]]		[[Category: Immunoglobulin-like beta-sandwich fold]]
-		+	[[Category: Transport protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 20:12:44 2009''~~	+

OCA at 18:12, 17 February 2009

OCA — Tue, 17 Feb 2009 18:12:46 GMT

←Older revision		Revision as of 18:12, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2OXG is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA].	+	2OXG is a 8 chains structure of sequences from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OXG OCA].

	==Reference==		==Reference==
-	~~The SoxYZ complex carries sulfur cycle intermediates on a peptide swinging arm., Sauve V, Bruno S, Berks BC, Hemmings AM, J Biol Chem. 2007 Aug 10;282(32):23194-204. Epub 2007 May 23.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17522046 17522046]~~	+	<ref group="xtra">PMID:17522046</ref><references group="xtra"/>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
-	[[Category: Protein complex]]
	[[Category: Berks, B C.]]		[[Category: Berks, B C.]]
	[[Category: Hemmings, A M.]]		[[Category: Hemmings, A M.]]
Line 31:		Line 30:
	[[Category: Immunoglobulin-like beta-sandwich fold]]		[[Category: Immunoglobulin-like beta-sandwich fold]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 04~~:04:~~20 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 20:12:44 2009''

OCA at 01:04, 29 July 2008

OCA — Tue, 29 Jul 2008 01:04:27 GMT

←Older revision		Revision as of 01:04, 29 July 2008
Line 1:		Line 1:
-	[[Image:2oxg.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2oxg.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_2oxg\| PDB=2oxg \| SCENE= }}		{{STRUCTURE_2oxg\| PDB=2oxg \| SCENE= }}

-	~~'''~~The SoxYZ Complex of Paracoccus pantotrophus~~'''~~	+	===The SoxYZ Complex of Paracoccus pantotrophus===


-	~~==Overview==~~	+	<!--
-	The ~~bacterial Sox (sulfur oxidizing) system allows the utilization of inorganic sulfur compounds in energy metabolism. Central to~~ this ~~process is~~ the SoxYZ complex that carries the pathway intermediates on a cysteine residue near the C terminus of SoxY. Crystal structures have been determined for Paracoccus pantotrophus SoxYZ with the carrier cysteine in the underivatized state, conjugated to the ~~polysulfide mimic beta-mercaptoethanol, and~~ as ~~the sulfonate adduct pathway intermediate. The carrier cysteine is located~~ on ~~a peptide swinging arm and is bracketed on either side by diglycine dipeptides acting as molecular universal joints~~. ~~This structure provides a novel solution to the requirement that the cysteine-bound intermediates be able to access and orient themselves within the active sites of multiple partner enzymes~~. ~~Adjacent to the swinging arm there~~ is ~~a conserved, deep, apolar pocket into which~~ the ~~beta~~-~~mercaptoethanol adduct extends. This pocket would be well suited to a role in protecting labile pathway intermediates from adventitious reactions.~~	+	The line below this paragraph, {{ABSTRACT_PUBMED_17522046}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 17522046 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_17522046}}

	==About this Structure==		==About this Structure==
Line 26:		Line 30:
	[[Category: Sauve, V.]]		[[Category: Sauve, V.]]
	[[Category: Immunoglobulin-like beta-sandwich fold]]		[[Category: Immunoglobulin-like beta-sandwich fold]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 11~~:52:29 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 04:04:20 2008''