2p72 - Revision history

OCA at 09:08, 21 February 2024

OCA — Wed, 21 Feb 2024 09:08:22 GMT

←Older revision		Revision as of 09:08, 21 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_1 Paramecium bursaria Chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_1 Paramecium bursaria Chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/Q89399_PBCV1 Q89399_PBCV1]		[https://www.uniprot.org/uniprot/Q89399_PBCV1 Q89399_PBCV1]
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Paramecium bursaria chlorella virus-1 encodes at least five putative glycosyltransferases that are probably involved in the synthesis of the glycan components of the viral major capsid protein. The 1.6 A crystal structure of one of these glycosyltransferases (A64R) has a mixed alpha/beta fold containing a central, six-stranded beta sheet flanked by alpha helices. Crystal structures of A64R, complexed with UDP, CMP, or GDP, established that only UDP bound to A64R in the presence of Mn(2+), consistent with its high structural similarity to glycosyltransferases which utilize UDP as the sugar carrier. The structure of the complex of A64R, UDP-glucose, and Mn(2+) showed that the largest conformational change occurred when hydrogen bonds were formed with the ligands. Unlike UDP-glucose, UDP-galactose and UDP-GlcNAc did not bind to A64R, suggesting a selective binding of UDP-glucose. Thus, UDP-glucose is most likely the sugar donor for A64R, consistent with glucose occurring in the virus major capsid protein glycans.
-
-	Structure and function of a chlorella virus-encoded glycosyltransferase.,Zhang Y, Xiang Y, Van Etten JL, Rossmann MG Structure. 2007 Sep;15(9):1031-9. PMID:17850743<ref>PMID:17850743</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2p72" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:46, 22 March 2023

OCA — Wed, 22 Mar 2023 07:46:11 GMT

←Older revision		Revision as of 07:46, 22 March 2023
Line 3:		Line 3:
	<StructureSection load='2p72' size='340' side='right'caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p72' size='340' side='right'caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Chlorella_pbcv-1_virus~~ Chlorella ~~pbcv-1~~ virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paramecium_bursaria_Chlorella_virus_1 Paramecium bursaria Chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p6w\|2p6w]], [[2p73\|2p73]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q89399_PBCV1 Q89399_PBCV1]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Chlorella pbcv-1 virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Etten, J L.Van~~]]	+	[[Category: Paramecium bursaria Chlorella virus 1]]
-	[[Category: Rossmann~~, M G~~]]	+	[[Category: Rossmann MG]]
-	[[Category: ~~Xiang, Y~~]]	+	[[Category: Van Etten JL]]
-	[[Category: ~~Zhang,~~ Y]]	+	[[Category: Xiang Y]]
-	[[Category: ~~Glycosyltransferase]]~~	+	[[Category: Zhang Y]]
-	~~[[Category: Pbcv-1]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 15:17, 17 June 2021

OCA — Thu, 17 Jun 2021 15:17:47 GMT

←Older revision		Revision as of 15:17, 17 June 2021
Line 1:		Line 1:

	==crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1==		==crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1==
-	<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2p72' size='340' side='right'caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Chlorella_pbcv-1_virus Chlorella pbcv-1 virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2P72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorella_pbcv-1_virus Chlorella pbcv-1 virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p6w\|2p6w]], [[2p73\|2p73]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [~~http~~://pdbe.org/2p72 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [https://pdbe.org/2p72 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [https://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Chlorella pbcv-1 virus]]		[[Category: Chlorella pbcv-1 virus]]
		+	[[Category: Large Structures]]
	[[Category: Etten, J L.Van]]		[[Category: Etten, J L.Van]]
	[[Category: Rossmann, M G]]		[[Category: Rossmann, M G]]

OCA at 09:19, 18 October 2017

OCA — Wed, 18 Oct 2017 09:19:40 GMT

←Older revision		Revision as of 09:19, 18 October 2017
Line 1:		Line 1:
		+
	==crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1==		==crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1==
	<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://pdbe.org/2p72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://pdbe.org/2p72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p72 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:02, 11 September 2015

OCA — Fri, 11 Sep 2015 02:02:35 GMT

←Older revision		Revision as of 02:02, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus~~ 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P72 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlorella_pbcv-1_virus Chlorella pbcv-1 virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 ~~Paramecium bursaria~~ Chlorella ~~virus~~ 1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Chlorella PBCV-1 virus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://pdbe.org/2p72 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2p72" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Paramecium bursaria chlorella virus~~ 1]]	+	[[Category: Chlorella pbcv-1 virus]]
	[[Category: Etten, J L.Van]]		[[Category: Etten, J L.Van]]
	[[Category: Rossmann, M G]]		[[Category: Rossmann, M G]]

OCA at 22:02, 3 January 2015

OCA — Sat, 03 Jan 2015 22:02:44 GMT

←Older revision		Revision as of 22:02, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P72 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Paramecium bursaria Chlorella virus 1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Paramecium bursaria Chlorella virus 1])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Paramecium bursaria chlorella virus 1]]		[[Category: Paramecium bursaria chlorella virus 1]]
-	[[Category: Etten, J L.Van.]]	+	[[Category: Etten, J L.Van]]
-	[[Category: Rossmann, M G.]]	+	[[Category: Rossmann, M G]]
-	[[Category: Xiang, Y.]]	+	[[Category: Xiang, Y]]
-	[[Category: Zhang, Y.]]	+	[[Category: Zhang, Y]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Pbcv-1]]		[[Category: Pbcv-1]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 07:08, 9 June 2014

OCA — Mon, 09 Jun 2014 07:08:32 GMT

←Older revision		Revision as of 07:08, 9 June 2014
Line 1:		Line 1:
-	[[~~Image:~~2p72.~~png~~\|~~left~~\|~~200px~~]]	+	==crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1==
		+	<StructureSection load='2p72' size='340' side='right' caption='[[2p72]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P72 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p6w\|2p6w]], [[2p73\|2p73]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">A64R ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10506 Paramecium bursaria Chlorella virus 1])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p72 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p72 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p72 RCSB], [http://www.ebi.ac.uk/pdbsum/2p72 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Paramecium bursaria chlorella virus-1 encodes at least five putative glycosyltransferases that are probably involved in the synthesis of the glycan components of the viral major capsid protein. The 1.6 A crystal structure of one of these glycosyltransferases (A64R) has a mixed alpha/beta fold containing a central, six-stranded beta sheet flanked by alpha helices. Crystal structures of A64R, complexed with UDP, CMP, or GDP, established that only UDP bound to A64R in the presence of Mn(2+), consistent with its high structural similarity to glycosyltransferases which utilize UDP as the sugar carrier. The structure of the complex of A64R, UDP-glucose, and Mn(2+) showed that the largest conformational change occurred when hydrogen bonds were formed with the ligands. Unlike UDP-glucose, UDP-galactose and UDP-GlcNAc did not bind to A64R, suggesting a selective binding of UDP-glucose. Thus, UDP-glucose is most likely the sugar donor for A64R, consistent with glucose occurring in the virus major capsid protein glycans.

-	~~{{STRUCTURE_2p72\| PDB=2p72 \| SCENE= }}~~	+	Structure and function of a chlorella virus-encoded glycosyltransferase.,Zhang Y, Xiang Y, Van Etten JL, Rossmann MG Structure. 2007 Sep;15(9):1031-9. PMID:17850743<ref>PMID:17850743</ref>

-	~~===crystal structure of~~ a ~~glycosyltransferase involved in the glycosylation~~ of the ~~major capsid of PBCV-1===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17850743}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2p72]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017850743<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Paramecium bursaria chlorella virus 1]]		[[Category: Paramecium bursaria chlorella virus 1]]
	[[Category: Etten, J L.Van.]]		[[Category: Etten, J L.Van.]]

OCA: Protected "2p72" [edit=sysop:move=sysop]

OCA — Tue, 14 Aug 2012 16:28:32 GMT

Protected "2p72" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:28, 14 August 2012

OCA at 16:28, 14 August 2012

OCA — Tue, 14 Aug 2012 16:28:30 GMT

←Older revision		Revision as of 16:28, 14 August 2012
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-	{{Seed}}
	[[Image:2p72.png\|left\|200px]]		[[Image:2p72.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2p72", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2p72\| PDB=2p72 \| SCENE= }}		{{STRUCTURE_2p72\| PDB=2p72 \| SCENE= }}

	===crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1===		===crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17850743}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17850743 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17850743}}		{{ABSTRACT_PUBMED_17850743}}

	==About this Structure==		==About this Structure==
-	~~2P72 is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA].	+	[[2p72]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA].

	==Reference==		==Reference==
-	~~Structure and function of a chlorella virus-encoded glycosyltransferase., Zhang Y, Xiang Y, Van Etten JL, Rossmann MG, Structure. 2007 Sep;15(9):1031-9.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~17850743 17850743]~~	+	<ref group="xtra">PMID:017850743</ref><references group="xtra"/>
	[[Category: Paramecium bursaria chlorella virus 1]]		[[Category: Paramecium bursaria chlorella virus 1]]
-	[[Category: Single protein]]
	[[Category: Etten, J L.Van.]]		[[Category: Etten, J L.Van.]]
	[[Category: Rossmann, M G.]]		[[Category: Rossmann, M G.]]
	[[Category: Xiang, Y.]]		[[Category: Xiang, Y.]]
	[[Category: Zhang, Y.]]		[[Category: Zhang, Y.]]
-	[[Category: Crystal structure]]
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Pbcv-1]]		[[Category: Pbcv-1]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Jul 23 10:04:33 2008''~~	+

OCA at 07:04, 23 July 2008

OCA — Wed, 23 Jul 2008 07:04:33 GMT

←Older revision		Revision as of 07:04, 23 July 2008
Line 1:		Line 1:
-	[[Image:2p72.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2p72.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2p72\| PDB=2p72 \| SCENE= }}		{{STRUCTURE_2p72\| PDB=2p72 \| SCENE= }}

-	~~'''~~crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1~~'''~~	+	===crystal structure of a glycosyltransferase involved in the glycosylation of the major capsid of PBCV-1===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_17850743}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 17850743 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_17850743}}

	==About this Structure==		==About this Structure==
	2P72 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA].		2P72 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Paramecium_bursaria_chlorella_virus_1 Paramecium bursaria chlorella virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P72 OCA].
		+
		+	==Reference==
		+	Structure and function of a chlorella virus-encoded glycosyltransferase., Zhang Y, Xiang Y, Van Etten JL, Rossmann MG, Structure. 2007 Sep;15(9):1031-9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17850743 17850743]
	[[Category: Paramecium bursaria chlorella virus 1]]		[[Category: Paramecium bursaria chlorella virus 1]]
	[[Category: Single protein]]		[[Category: Single protein]]
Line 23:		Line 33:
	[[Category: Glycosyltransferase]]		[[Category: Glycosyltransferase]]
	[[Category: Pbcv-1]]		[[Category: Pbcv-1]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 12~~:31:23 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jul 23 10:04:33 2008''