2p8g - Revision history

OCA at 14:55, 20 September 2023

OCA — Wed, 20 Sep 2023 14:55:03 GMT

←Older revision		Revision as of 14:55, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.36Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>

OCA at 06:48, 25 January 2023

OCA — Wed, 25 Jan 2023 06:48:16 GMT

←Older revision		Revision as of 06:48, 25 January 2023
Line 3:		Line 3:
	<StructureSection load='2p8g' size='340' side='right'caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='2p8g' size='340' side='right'caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>~~	+
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PADC_BACSU PADC_BACSU]] Involved in the decarboxylation and detoxification of phenolic derivatives. It is able to catalyze the decarboxylation of ferulic, p-coumaric and caffeic acids.<ref>PMID:9546183</ref>	+	[https://www.uniprot.org/uniprot/PADC_BACSU PADC_BACSU] Involved in the decarboxylation and detoxification of phenolic derivatives. It is able to catalyze the decarboxylation of ferulic, p-coumaric and caffeic acids.<ref>PMID:9546183</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Jcsg]]
-	[[Category: Lyase]]
-	[[Category: PSI, Protein structure initiative]]

OCA at 18:23, 20 October 2021

OCA — Wed, 20 Oct 2021 18:23:45 GMT

←Older revision		Revision as of 18:23, 20 October 2021
Line 3:		Line 3:
	<StructureSection load='2p8g' size='340' side='right'caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='2p8g' size='340' side='right'caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "~~Bacillus globigii~~" ~~Migula 1900~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 15:18, 17 June 2021

OCA — Thu, 17 Jun 2021 15:18:33 GMT

←Older revision		Revision as of 15:18, 17 June 2021
Line 1:		Line 1:

	==Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution==		==Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution==
-	<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>	+	<StructureSection load='2p8g' size='340' side='right'caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2P8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [~~http~~://pdbe.org/2p8g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [~~http~~://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [https://pdbe.org/2p8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [https://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [https://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PADC_BACSU PADC_BACSU]] Involved in the decarboxylation and detoxification of phenolic derivatives. It is able to catalyze the decarboxylation of ferulic, p-coumaric and caffeic acids.<ref>PMID:9546183</ref>	+	[[https://www.uniprot.org/uniprot/PADC_BACSU PADC_BACSU]] Involved in the decarboxylation and detoxification of phenolic derivatives. It is able to catalyze the decarboxylation of ferulic, p-coumaric and caffeic acids.<ref>PMID:9546183</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8g_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8g_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus globigii migula 1900]]		[[Category: Bacillus globigii migula 1900]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 09:20, 18 October 2017

OCA — Wed, 18 Oct 2017 09:20:03 GMT

←Older revision		Revision as of 09:20, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution==		==Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution==
	<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://pdbe.org/2p8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://pdbe.org/2p8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p8g ProSAT], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 11:44, 7 February 2016

OCA — Sun, 07 Feb 2016 11:44:23 GMT

←Older revision		Revision as of 11:44, 7 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p8g ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 01:10, 10 September 2015

OCA — Thu, 10 Sep 2015 01:10:34 GMT

←Older revision		Revision as of 01:10, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus ~~subtilis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Bacillus globigii" Migula 1900])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://pdbe.org/2p8g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Jcsg]]		[[Category: Jcsg]]
	[[Category: Lyase]]		[[Category: Lyase]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]

OCA at 14:49, 24 December 2014

OCA — Wed, 24 Dec 2014 14:49:45 GMT

←Older revision		Revision as of 14:49, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8G FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PADC_BACSU PADC_BACSU]] Involved in the decarboxylation and detoxification of phenolic derivatives. It is able to catalyze the decarboxylation of ferulic, p-coumaric and caffeic acids.<ref>PMID:9546183</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: ~~JCSG, Joint Center for~~ Structural ~~Genomics.]]~~	+	[[Category: Structural genomic]]
-	~~[[Category: 2635953~~]]	+
	[[Category: Jcsg]]		[[Category: Jcsg]]
-	[[Category: Joint center for structural genomic]]
	[[Category: Lyase]]		[[Category: Lyase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi-2]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 18:26, 30 September 2014

OCA — Tue, 30 Sep 2014 18:26:48 GMT

←Older revision		Revision as of 18:26, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2p8g.png\|left\|200px]]~~	+	==Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution==
-		+	<StructureSection load='2p8g' size='340' side='right' caption='[[2p8g]], [[Resolution\|resolution]] 1.36Å' scene=''>
-	~~{{STRUCTURE_2p8g\| PDB=2p8g \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P8G FirstGlance]. <br>
-	===Crystal structure of phenolic acid decarboxylase (2635953) from Bacillus subtilis at 1.36 A resolution===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">padC, pad, BSU34400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p8g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p8g RCSB], [http://www.ebi.ac.uk/pdbsum/2p8g PDBsum], [http://www.topsan.org/Proteins/JCSG/2p8g TOPSAN]</span></td></tr>
-	[[2p8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P8G OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p8g_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: JCSG, Joint Center for Structural Genomics.]]		[[Category: JCSG, Joint Center for Structural Genomics.]]

OCA: Protected "2p8g" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 13:18:59 GMT

Protected "2p8g" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:18, 7 January 2013