2p9y - Revision history

OCA at 08:59, 25 October 2023

OCA — Wed, 25 Oct 2023 08:59:44 GMT

←Older revision		Revision as of 08:59, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[2p9z\|2p9z]], [[2pa0\|2pa0]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>[https://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [https://pdbe.org/2p9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [https://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [https://pdbe.org/2p9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [https://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Adenosylcobalamin/alpha-ribazole phosphatase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8~~]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Kageyama, Y]]	+	[[Category: Kageyama Y]]
-	[[Category: Kunishima, N]]	+	[[Category: Kunishima N]]
-	[[Category: Matsuura, Y]]	+	[[Category: Matsuura Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Shimada H]]
-	[[Category: Shimada, H]]	+	[[Category: Sugahara M]]
-	[[Category: Sugahara, M]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Thermus thermophilus hb8~~]]	+

OCA at 07:06, 10 November 2021

OCA — Wed, 10 Nov 2021 07:06:59 GMT

←Older revision		Revision as of 07:06, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2p9z\|2p9z]], [[2pa0\|2pa0]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [~~http~~://pdbe.org/2p9y PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [https://pdbe.org/2p9y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [https://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:10, 27 May 2020

OCA — Wed, 27 May 2020 08:10:18 GMT

←Older revision		Revision as of 08:10, 27 May 2020
Line 1:		Line 1:

	==Crystal structure of TTHB049 from Thermus thermophilus HB8==		==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-	<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='2p9y' size='340' side='right'caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://pdbe.org/2p9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://pdbe.org/2p9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Adenosylcobalamin/alpha-ribazole phosphatase]]		[[Category: Adenosylcobalamin/alpha-ribazole phosphatase]]
		+	[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Kageyama, Y]]		[[Category: Kageyama, Y]]

OCA at 06:44, 22 August 2018

OCA — Wed, 22 Aug 2018 06:44:46 GMT

←Older revision		Revision as of 06:44, 22 August 2018
Line 1:		Line 1:
		+
	==Crystal structure of TTHB049 from Thermus thermophilus HB8==		==Crystal structure of TTHB049 from Thermus thermophilus HB8==
	<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://pdbe.org/2p9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://pdbe.org/2p9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2p9y ProSAT], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9y_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9y_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 19:48, 9 February 2016

OCA — Tue, 09 Feb 2016 19:48:56 GMT

←Older revision		Revision as of 19:48, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p9y ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 01:29, 11 September 2015

OCA — Fri, 11 Sep 2015 01:29:02 GMT

←Older revision		Revision as of 01:29, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb8 Thermus thermophilus hb8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/~~Alpha~~-ribazole_phosphatase ~~Alpha~~-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylcobalamin/alpha-ribazole_phosphatase Adenosylcobalamin/alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://pdbe.org/2p9y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Alpha~~-ribazole phosphatase]]	+	[[Category: Adenosylcobalamin/alpha-ribazole phosphatase]]
-	[[Category: ~~Thermus thermophilus hb8~~]]	+	[[Category: Thet8]]
	[[Category: Kageyama, Y]]		[[Category: Kageyama, Y]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]
Line 32:		Line 32:
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
		+	[[Category: Thermus thermophilus hb8]]

OCA at 13:11, 19 January 2015

OCA — Mon, 19 Jan 2015 13:11:11 GMT

←Older revision		Revision as of 13:11, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>		<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	[[Category: Alpha-ribazole phosphatase]]		[[Category: Alpha-ribazole phosphatase]]
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
-	[[Category: Kageyama, Y.]]	+	[[Category: Kageyama, Y]]
-	[[Category: Kunishima, N.]]	+	[[Category: Kunishima, N]]
-	[[Category: Matsuura, Y.]]	+	[[Category: Matsuura, Y]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shimada, H.]]	+	[[Category: Shimada, H]]
-	[[Category: Sugahara, M.]]	+	[[Category: Sugahara, M]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
-	[[Category: Thermus thermophilus hb8]]

OCA at 17:56, 30 September 2014

OCA — Tue, 30 Sep 2014 17:56:45 GMT

←Older revision		Revision as of 17:56, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2p9y.png\|left\|200px]]~~	+	==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-		+	<StructureSection load='2p9y' size='340' side='right' caption='[[2p9y]], [[Resolution\|resolution]] 1.85Å' scene=''>
-	~~{{STRUCTURE_2p9y\| PDB=2p9y \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2P9Y FirstGlance]. <br>
-	===Crystal structure of TTHB049 from Thermus thermophilus HB8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2p9z\|2p9z]], [[2pa0\|2pa0]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2p9y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p9y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2p9y RCSB], [http://www.ebi.ac.uk/pdbsum/2p9y PDBsum], [http://www.topsan.org/Proteins/RSGI/2p9y TOPSAN]</span></td></tr>
-	[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p9/2p9y_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Alpha-ribazole phosphatase]]		[[Category: Alpha-ribazole phosphatase]]
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]

OCA: Protected "2p9y" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 12:48:11 GMT

Protected "2p9y" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:48, 7 January 2013

OCA at 12:48, 7 January 2013

OCA — Mon, 07 Jan 2013 12:48:10 GMT

←Older revision		Revision as of 12:48, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2p9y.png\|left\|200px]]		[[Image:2p9y.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2p9y", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2p9y\| PDB=2p9y \| SCENE= }}		{{STRUCTURE_2p9y\| PDB=2p9y \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2P9Y~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA].	+	[[2p9y]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P9Y OCA].
	[[Category: Alpha-ribazole phosphatase]]		[[Category: Alpha-ribazole phosphatase]]
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus hb8]]
	[[Category: Kageyama, Y.]]		[[Category: Kageyama, Y.]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]
Line 30:		Line 23:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:47:59 2008''