2pdy - Revision history

OCA at 10:59, 30 August 2023

OCA — Wed, 30 Aug 2023 10:59:37 GMT

←Older revision		Revision as of 10:59, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2pdy' size='340' side='right'caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2pdy' size='340' side='right'caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PDY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PDY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.65Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [https://pdbe.org/2pdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [https://www.ebi.ac.uk/pdbsum/2pdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdy ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [https://pdbe.org/2pdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [https://www.ebi.ac.uk/pdbsum/2pdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/ALDR_HUMAN ALDR_HUMAN]] Catalyzes the NADPH-dependent reduction of a wide variety of carbonyl-containing compounds to their corresponding alcohols with a broad range of catalytic efficiencies.	+	[https://www.uniprot.org/uniprot/ALDR_HUMAN ALDR_HUMAN] Catalyzes the NADPH-dependent reduction of a wide variety of carbonyl-containing compounds to their corresponding alcohols with a broad range of catalytic efficiencies.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aldehyde reductase]]~~	+	[[Category: Homo sapiens]]
-	~~[[Category: Human~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Heine, A]]	+	[[Category: Heine A]]
-	[[Category: Klebe, G]]	+	[[Category: Klebe G]]
-	[[Category: Steuber, H]]	+	[[Category: Steuber H]]
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Tim barrel~~]]	+

OCA at 15:21, 17 June 2021

OCA — Thu, 17 Jun 2021 15:21:55 GMT

←Older revision		Revision as of 15:21, 17 June 2021
Line 1:		Line 1:

	==Human aldose reductase double mutant S302R-C303D complexed with fidarestat.==		==Human aldose reductase double mutant S302R-C303D complexed with fidarestat.==
-	<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>	+	<StructureSection load='2pdy' size='340' side='right'caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2PDY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PDY FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [~~http~~://pdbe.org/2pdy PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2pdy PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdy ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [https://pdbe.org/2pdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [https://www.ebi.ac.uk/pdbsum/2pdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ALDR_HUMAN ALDR_HUMAN]] Catalyzes the NADPH-dependent reduction of a wide variety of carbonyl-containing compounds to their corresponding alcohols with a broad range of catalytic efficiencies.	+	[[https://www.uniprot.org/uniprot/ALDR_HUMAN ALDR_HUMAN]] Catalyzes the NADPH-dependent reduction of a wide variety of carbonyl-containing compounds to their corresponding alcohols with a broad range of catalytic efficiencies.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:

	==See Also==		==See Also==
-	*[[Aldose ~~Reductase~~\|Aldose ~~Reductase~~]]	+	*[[Aldose reductase 3D structures\|Aldose reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 40:		Line 40:
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Heine, A]]		[[Category: Heine, A]]
	[[Category: Klebe, G]]		[[Category: Klebe, G]]

OCA at 08:26, 29 August 2018

OCA — Wed, 29 Aug 2018 08:26:15 GMT

←Older revision		Revision as of 08:26, 29 August 2018
Line 1:		Line 1:
		+
	==Human aldose reductase double mutant S302R-C303D complexed with fidarestat.==		==Human aldose reductase double mutant S302R-C303D complexed with fidarestat.==
	<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://pdbe.org/2pdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://pdbe.org/2pdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdy ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pdy_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pdy_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pdy ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:35, 11 September 2015

OCA — Fri, 11 Sep 2015 07:35:54 GMT

←Older revision		Revision as of 07:35, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>		<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PDY FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PDY FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 ~~Homo sapiens~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://pdbe.org/2pdy PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 29:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2pdy" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 37:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
	[[Category: Heine, A]]		[[Category: Heine, A]]
	[[Category: Klebe, G]]		[[Category: Klebe, G]]

OCA at 13:18, 25 December 2014

OCA — Thu, 25 Dec 2014 13:18:59 GMT

←Older revision		Revision as of 13:18, 25 December 2014
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PDY FirstGlance]. <br>		<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PDY FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ALDR_HUMAN ALDR_HUMAN]] Catalyzes the NADPH-dependent reduction of a wide variety of carbonyl-containing compounds to their corresponding alcohols with a broad range of catalytic efficiencies.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 38:
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Heine, A.]]	+	[[Category: Heine, A]]
-	[[Category: Klebe, G.]]	+	[[Category: Klebe, G]]
-	[[Category: Steuber, H.]]	+	[[Category: Steuber, H]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Tim barrel]]		[[Category: Tim barrel]]

OCA at 06:30, 29 September 2014

OCA — Mon, 29 Sep 2014 06:30:46 GMT

←Older revision		Revision as of 06:30, 29 September 2014
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-	[[~~Image:~~2pdy.~~png~~\|~~left~~\|200px]]	+	==Human aldose reductase double mutant S302R-C303D complexed with fidarestat.==
		+	<StructureSection load='2pdy' size='340' side='right' caption='[[2pdy]], [[Resolution\|resolution]] 1.65Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PDY FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FID:(2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4-IMIDAZOLIDINE]-2,5-DIONE'>FID</scene>, <scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1pwm\|1pwm]], [[2pdg\|2pdg]], [[2pd5\|2pd5]], [[2pd9\|2pd9]], [[2pdb\|2pdb]], [[2pdc\|2pdc]], [[2pdf\|2pdf]], [[2pdh\|2pdh]], [[2pdi\|2pdi]], [[2pdj\|2pdj]], [[2pdk\|2pdk]], [[2pdl\|2pdl]], [[2pdm\|2pdm]], [[2pdn\|2pdn]], [[2pdp\|2pdp]], [[2pdq\|2pdq]], [[2pdu\|2pdu]], [[2pdw\|2pdw]], [[2pdx\|2pdx]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ALR2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aldehyde_reductase Aldehyde reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.21 1.1.1.21] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pdy RCSB], [http://www.ebi.ac.uk/pdbsum/2pdy PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pdy_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Inhibition of human aldose reductase (ALR2) evolved as a promising therapeutic concept to prevent late complications of diabetes. As well as appropriate affinity and bioavailability, putative inhibitors should possess a high level of selectivity for ALR2 over the related aldehyde reductase (ALR1). We investigated the selectivity-determining features by gradually mapping the residues deviating between the binding pockets of ALR1 and ALR2 into the ALR2 binding pocket. The resulting mutational constructs of ALR2 (eight point mutations and one double mutant) were probed for their influence towards ligand selectivity by X-ray structure analysis of the corresponding complexes and isothermal titration calorimetry (ITC). The binding properties of these mutants were evaluated using a ligand set of zopolrestat, a related uracil derivative, IDD388, IDD393, sorbinil, fidarestat and tolrestat. Our study revealed induced-fit adaptations within the mutated binding site as an essential prerequisite for ligand accommodation related to the selectivity discrimination of the ligands. However, our study also highlights the limits of the present understanding of protein-ligand interactions. Interestingly, binding site mutations not involved in any direct interaction to the ligands in various cases show significant effects towards their binding thermodynamics. Furthermore, our results suggest the binding site residues deviating between ALR1 and ALR2 influence ligand affinity in a complex interplay, presumably involving changes of dynamic properties and differences of the solvation/desolvation balance upon ligand binding.

-	~~{{STRUCTURE_2pdy\| PDB=2pdy \| SCENE= }}~~	+	Merging the binding sites of aldose and aldehyde reductase for detection of inhibitor selectivity-determining features.,Steuber H, Heine A, Podjarny A, Klebe G J Mol Biol. 2008 Jun 20;379(5):991-1016. Epub 2008 Apr 8. PMID:18495158<ref>PMID:18495158</ref>

-	~~===Human aldose reductase double mutant S302R-C303D complexed with fidarestat.===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18495158}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2pdy]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Homo_sapiens Homo sapiens]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].~~	+

	==See Also==		==See Also==
	*[[Aldose Reductase\|Aldose Reductase]]		*[[Aldose Reductase\|Aldose Reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:018495158<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]

OCA at 17:09, 20 October 2012

OCA — Sat, 20 Oct 2012 17:09:21 GMT

←Older revision		Revision as of 17:09, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[2pdy]] is a 1 chain structure ~~of [[Aldose Reductase]]~~ with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].	+	[[2pdy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].

	==See Also==		==See Also==

OCA: Protected "2pdy" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 00:00:10 GMT

Protected "2pdy" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:00, 27 July 2012

OCA at 00:00, 27 July 2012

OCA — Fri, 27 Jul 2012 00:00:08 GMT

←Older revision		Revision as of 00:00, 27 July 2012
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-	{{Seed}}
	[[Image:2pdy.png\|left\|200px]]		[[Image:2pdy.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2pdy", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2pdy\| PDB=2pdy \| SCENE= }}		{{STRUCTURE_2pdy\| PDB=2pdy \| SCENE= }}

	===Human aldose reductase double mutant S302R-C303D complexed with fidarestat.===		===Human aldose reductase double mutant S302R-C303D complexed with fidarestat.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18495158}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18495158 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18495158}}		{{ABSTRACT_PUBMED_18495158}}

	==About this Structure==		==About this Structure==
-	~~2PDY~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].	+	[[2pdy]] is a 1 chain structure of [[Aldose Reductase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].
		+
		+	==See Also==
		+	*[[Aldose Reductase\|Aldose Reductase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18495158~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018495158</ref><references group="xtra"/>
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
Line 31:		Line 22:
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Tim barrel]]		[[Category: Tim barrel]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:13:51 2009''

OCA at 15:13, 17 February 2009

OCA — Tue, 17 Feb 2009 15:13:52 GMT

←Older revision		Revision as of 15:13, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2PDY is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].	+	2PDY is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDY OCA].

	==Reference==		==Reference==
-	Merging the binding sites of aldose and aldehyde reductase for detection of inhibitor selectivity-determining features., Steuber H, Heine A, Podjarny A, Klebe G, J Mol Biol. 2008 Jun 20;379(5):991-1016. Epub 2008 Apr 8. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/18495158 18495158]~~	+	<ref group="xtra">PMID:18495158</ref><references group="xtra"/>
	[[Category: Aldehyde reductase]]		[[Category: Aldehyde reductase]]
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: Single protein]]
	[[Category: Heine, A.]]		[[Category: Heine, A.]]
	[[Category: Klebe, G.]]		[[Category: Klebe, G.]]
Line 33:		Line 32:
	[[Category: Tim barrel]]		[[Category: Tim barrel]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 2 21~~:23:~~08 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:13:51 2009''