2pqg - Revision history

OCA at 11:06, 30 August 2023

OCA — Wed, 30 Aug 2023 11:06:52 GMT

←Older revision		Revision as of 11:06, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='2pqg' size='340' side='right'caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>		<StructureSection load='2pqg' size='340' side='right'caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Maize Maize~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PQG FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>CRIP3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=4577 MAIZE])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.38Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/rRNA_N~~-~~glycosylase rRNA N-glycosylase]~~, ~~with EC number~~ [~~https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.~~2.~~2.22 3.2.2.22] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [https://pdbe.org/2pqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [https://www.ebi.ac.uk/pdbsum/2pqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pqg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [https://pdbe.org/2pqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [https://www.ebi.ac.uk/pdbsum/2pqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RIP3_MAIZE RIP3_MAIZE]] Possesses features of some constitutive defense agent. The coordinate Opaque-2-controlled synthesis of this protein and the major seed storage proteins (zeins) may provide the germinating seedling with both nutritional benefits and protection against pathogen invasion of the surrounding endosperm.	+	[https://www.uniprot.org/uniprot/RIP3_MAIZE RIP3_MAIZE] Possesses features of some constitutive defense agent. The coordinate Opaque-2-controlled synthesis of this protein and the major seed storage proteins (zeins) may provide the germinating seedling with both nutritional benefits and protection against pathogen invasion of the surrounding endosperm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 30:

	==See Also==		==See Also==
-	*[[Ribosome inactivating protein\|Ribosome inactivating protein]]	+	*[[Ribosome inactivating protein 3D structures\|Ribosome inactivating protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Maize]]~~	+	[[Category: Zea mays]]
-	~~[[Category: RRNA N-glycosylase~~]]	+	[[Category: Au SWN]]
-	[[Category: Au~~, S W.N~~]]	+	[[Category: Cha SS]]
-	[[Category: Cha~~, S S~~]]	+	[[Category: Mak ANS]]
-	[[Category: Mak~~, A N.S~~]]	+	[[Category: Shaw PC]]
-	[[Category: Shaw~~, P C~~]]	+	[[Category: Sze KH]]
-	[[Category: Sze~~, K H~~]]	+	[[Category: Wong KB]]
-	[[Category: Wong~~, K B~~]]	+	[[Category: Wong YT]]
-	[[Category: Wong~~, Y T~~]]	+	[[Category: Young JA]]
-	[[Category: Young~~, J A]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Pro-rip]]~~	+
-	~~[[Category: Ribosome inactivating protein~~]]	+

OCA at 15:30, 17 June 2021

OCA — Thu, 17 Jun 2021 15:30:25 GMT

←Older revision		Revision as of 15:30, 17 June 2021
Line 1:		Line 1:

	==Crystal structure of inactive ribosome inactivating protein from maize (b-32)==		==Crystal structure of inactive ribosome inactivating protein from maize (b-32)==
-	<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>	+	<StructureSection load='2pqg' size='340' side='right'caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2PQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PQG FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [~~http~~://pdbe.org/2pqg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2pqg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2pqg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [https://pdbe.org/2pqg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [https://www.ebi.ac.uk/pdbsum/2pqg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RIP3_MAIZE RIP3_MAIZE]] Possesses features of some constitutive defense agent. The coordinate Opaque-2-controlled synthesis of this protein and the major seed storage proteins (zeins) may provide the germinating seedling with both nutritional benefits and protection against pathogen invasion of the surrounding endosperm.	+	[[https://www.uniprot.org/uniprot/RIP3_MAIZE RIP3_MAIZE]] Possesses features of some constitutive defense agent. The coordinate Opaque-2-controlled synthesis of this protein and the major seed storage proteins (zeins) may provide the germinating seedling with both nutritional benefits and protection against pathogen invasion of the surrounding endosperm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</div>		</div>
	<div class="pdbe-citations 2pqg" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2pqg" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ribosome inactivating protein\|Ribosome inactivating protein]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Maize]]		[[Category: Maize]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]

OCA at 18:58, 24 January 2018

OCA — Wed, 24 Jan 2018 18:58:40 GMT

←Older revision		Revision as of 18:58, 24 January 2018
Line 1:		Line 1:
		+
	==Crystal structure of inactive ribosome inactivating protein from maize (b-32)==		==Crystal structure of inactive ribosome inactivating protein from maize (b-32)==
	<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>		<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://pdbe.org/2pqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://pdbe.org/2pqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2pqg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pq/2pqg_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pq/2pqg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 00:39, 10 February 2016

OCA — Wed, 10 Feb 2016 00:39:48 GMT

←Older revision		Revision as of 00:39, 10 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pqg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:38, 11 September 2015

OCA — Fri, 11 Sep 2015 03:38:47 GMT

←Older revision		Revision as of 03:38, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>		<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Zea_mays Zea mays~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PQG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PQG FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 ~~Zea mays~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://pdbe.org/2pqg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2pqg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Zea mays~~]]	+	[[Category: Maize]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]
	[[Category: Au, S W.N]]		[[Category: Au, S W.N]]
Line 42:		Line 43:
	[[Category: Young, J A]]		[[Category: Young, J A]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: Maize]]
	[[Category: Pro-rip]]		[[Category: Pro-rip]]
	[[Category: Ribosome inactivating protein]]		[[Category: Ribosome inactivating protein]]

OCA at 10:35, 25 December 2014

OCA — Thu, 25 Dec 2014 10:35:02 GMT

←Older revision		Revision as of 10:35, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PQG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PQG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 Zea mays])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 Zea mays])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RIP3_MAIZE RIP3_MAIZE]] Possesses features of some constitutive defense agent. The coordinate Opaque-2-controlled synthesis of this protein and the major seed storage proteins (zeins) may provide the germinating seedling with both nutritional benefits and protection against pathogen invasion of the surrounding endosperm.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]
-	[[Category: Au, S W.N.]]	+	[[Category: Au, S W.N]]
-	[[Category: Cha, S S.]]	+	[[Category: Cha, S S]]
-	[[Category: Mak, A N.S.]]	+	[[Category: Mak, A N.S]]
-	[[Category: Shaw, P C.]]	+	[[Category: Shaw, P C]]
-	[[Category: Sze, K H.]]	+	[[Category: Sze, K H]]
-	[[Category: Wong, K B.]]	+	[[Category: Wong, K B]]
-	[[Category: Wong, Y T.]]	+	[[Category: Wong, Y T]]
	[[Category: Young, J A]]		[[Category: Young, J A]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 19:43, 30 September 2014

OCA — Tue, 30 Sep 2014 19:43:22 GMT

←Older revision		Revision as of 19:43, 30 September 2014
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-	[[~~Image~~:2pqg.~~png\|left~~\|200px]]	+	==Crystal structure of inactive ribosome inactivating protein from maize (b-32)==
		+	<StructureSection load='2pqg' size='340' side='right' caption='[[2pqg]], [[Resolution\|resolution]] 2.38Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2PQG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CRIP3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 Zea mays])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/rRNA_N-glycosylase rRNA N-glycosylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.22 3.2.2.22] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pqg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pqg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pqg RCSB], [http://www.ebi.ac.uk/pdbsum/2pqg PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pq/2pqg_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Maize ribosome-inactivating protein is classified as a class III or an atypical RNA N-glycosidase. It is synthesized as an inactive precursor with a 25-amino acid internal inactivation region, which is removed in the active form. As the first structural example of this class of proteins, crystals of the precursor and the active form were diffracted to 2.4 and 2.5 A, respectively. The two proteins are similar, with main chain root mean square deviation (RMSD) of 0.519. In the precursor, the inactivation region is found on the protein surface and consists of a flexible loop followed by a long alpha-helix. This region diminished both the interaction with ribosome and cytotoxicity, but not cellular uptake. Like bacterial ribosome-inactivating proteins, maize ribosome-inactivating protein does not have a back-up glutamate in the active site, which helps the protein to retain some activity if the catalytic glutamate is mutated. The structure reveals that the active site is too small to accommodate two glutamate residues. Our structure suggests that maize ribosome-inactivating protein may represent an intermediate product in the evolution of ribosome-inactivating proteins.

-	~~{{STRUCTURE_2pqg\| PDB=2pqg \| SCENE= }}~~	+	Structure-function study of maize ribosome-inactivating protein: implications for the internal inactivation region and the sole glutamate in the active site.,Mak AN, Wong YT, An YJ, Cha SS, Sze KH, Au SW, Wong KB, Shaw PC Nucleic Acids Res. 2007;35(18):6259-67. Epub 2007 Sep 13. PMID:17855394<ref>PMID:17855394</ref>

-	~~===Crystal structure~~ of ~~inactive ribosome inactivating protein from maize (b-32)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17855394}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2pqg]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Zea_mays Zea mays]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017855394<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]

OCA: Protected "2pqg" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 14:44:08 GMT

Protected "2pqg" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:44, 7 January 2013

OCA at 14:44, 7 January 2013

OCA — Mon, 07 Jan 2013 14:44:06 GMT

←Older revision		Revision as of 14:44, 7 January 2013
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-	{{Seed}}
	[[Image:2pqg.png\|left\|200px]]		[[Image:2pqg.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2pqg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2pqg\| PDB=2pqg \| SCENE= }}		{{STRUCTURE_2pqg\| PDB=2pqg \| SCENE= }}

	===Crystal structure of inactive ribosome inactivating protein from maize (b-32)===		===Crystal structure of inactive ribosome inactivating protein from maize (b-32)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17855394}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17855394 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17855394}}		{{ABSTRACT_PUBMED_17855394}}

	==About this Structure==		==About this Structure==
-	~~2PQG~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA].	+	[[2pqg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17855394~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017855394</ref><references group="xtra"/>
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]
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	[[Category: Pro-rip]]		[[Category: Pro-rip]]
	[[Category: Ribosome inactivating protein]]		[[Category: Ribosome inactivating protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:02:05 2009''

OCA at 12:02, 17 February 2009

OCA — Tue, 17 Feb 2009 12:02:06 GMT

←Older revision		Revision as of 12:02, 17 February 2009
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	==About this Structure==		==About this Structure==
-	2PQG is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA].	+	2PQG is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQG OCA].

	==Reference==		==Reference==
-	Structure-function study of maize ribosome-inactivating protein: implications for the internal inactivation region and the sole glutamate in the active site., Mak AN, Wong YT, An YJ, Cha SS, Sze KH, Au SW, Wong KB, Shaw PC, Nucleic Acids Res. 2007;35(18):6259-67. Epub 2007 Sep 13. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17855394 17855394]~~	+	<ref group="xtra">PMID:17855394</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Zea mays]]		[[Category: Zea mays]]
	[[Category: RRNA N-glycosylase]]		[[Category: RRNA N-glycosylase]]
Line 40:		Line 39:
	[[Category: Ribosome inactivating protein]]		[[Category: Ribosome inactivating protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 19~~:20:~~47 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:02:05 2009''