2rk9 - Revision history

OCA at 18:52, 20 October 2021

OCA — Wed, 20 Oct 2021 18:52:00 GMT

←Older revision		Revision as of 18:52, 20 October 2021
Line 1:		Line 1:

	==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==		==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==
-	<StructureSection load='2rk9' size='340' side='right'caption='[[2rk9]]' scene=''>	+	<StructureSection load='2rk9' size='340' side='right'caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibs1 Vibs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [https://pdbe.org/2rk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 VIBS1])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [https://pdbe.org/2rk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 23:		Line 25:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Burley SK]]	+	[[Category: Vibs1]]
-	[[Category: Eswaramoorthy S]]	+	[[Category: Burley, S K]]
-	[[Category: Sauder JM]]	+	[[Category: Eswaramoorthy, S]]
-	[[Category: Swaminathan S]]	+	[[Category: Structural genomic]]
-	[[Category: Tyagi R]]	+	[[Category: Sauder, J M]]
		+	[[Category: Swaminathan, S]]
		+	[[Category: Tyagi, R]]
		+	[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: PSI, Protein structure initiative]]

OCA at 04:28, 2 July 2021

OCA — Fri, 02 Jul 2021 04:28:27 GMT

←Older revision		Revision as of 04:28, 2 July 2021
Line 1:		Line 1:

	==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==		==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==
-	<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]]~~, [[Resolution\|resolution]] 1.60Å~~' scene=''>	+	<StructureSection load='2rk9' size='340' side='right'caption='[[2rk9]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibs1 Vibs1].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>
-	</td></tr>~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [https://pdbe.org/2rk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 VIBS1])</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [~~http~~://pdbe.org/2rk9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 18:

	==See Also==		==See Also==
-	*[[~~Crystal structure of protein from Staphylococcus aureus~~\|~~Crystal structure of protein from Staphylococcus aureus~~]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
-	*[[~~Dioxygenase~~\|~~Dioxygenase~~]]	+	*[[Glyoxalase 3D structures\|Glyoxalase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibs1~~]]	+	[[Category: Large Structures]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Eswaramoorthy, S]]	+	[[Category: Eswaramoorthy S]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Sauder JM]]
-	[[Category: Sauder~~, J M~~]]	+	[[Category: Swaminathan S]]
-	[[Category: Swaminathan, S]]	+	[[Category: Tyagi R]]
-	[[Category: Tyagi, R]]	+
-	~~[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 11:10, 5 September 2018

OCA — Wed, 05 Sep 2018 11:10:03 GMT

←Older revision		Revision as of 11:10, 5 September 2018
Line 3:		Line 3:
	<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_splendidus_12b01 Vibrio splendidus 12b01~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibs1 Vibs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 ~~Vibrio splendidus 12B01~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 VIBS1])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://pdbe.org/2rk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://pdbe.org/2rk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
	</table>		</table>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio splendidus 12b01~~]]	+	[[Category: Vibs1]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Eswaramoorthy, S]]		[[Category: Eswaramoorthy, S]]

OCA at 19:59, 11 August 2016

OCA — Thu, 11 Aug 2016 19:59:56 GMT

←Older revision		Revision as of 19:59, 11 August 2016
Line 1:		Line 1:
		+
	==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==		==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==
	<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 Vibrio splendidus 12B01])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 Vibrio splendidus 12B01])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://pdbe.org/2rk9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rk9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Crystal structure of protein from Staphylococcus aureus\|Crystal structure of protein from Staphylococcus aureus]]		*[[Crystal structure of protein from Staphylococcus aureus\|Crystal structure of protein from Staphylococcus aureus]]
		+	*[[Dioxygenase\|Dioxygenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:41, 6 November 2014

OCA — Thu, 06 Nov 2014 12:41:27 GMT

←Older revision		Revision as of 12:41, 6 November 2014
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio splendidus 12b01]]		[[Category: Vibrio splendidus 12b01]]
		+	[[Category: Burley, S K]]
		+	[[Category: Eswaramoorthy, S]]
		+	[[Category: Structural genomic]]
		+	[[Category: Sauder, J M]]
		+	[[Category: Swaminathan, S]]
	[[Category: Tyagi, R]]		[[Category: Tyagi, R]]
	[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]		[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: PSI, Protein structure initiative]]

OCA at 12:02, 6 November 2014

OCA — Thu, 06 Nov 2014 12:02:12 GMT

←Older revision		Revision as of 12:02, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 Vibrio splendidus 12B01])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 Vibrio splendidus 12B01])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio splendidus 12b01]]		[[Category: Vibrio splendidus 12b01]]
-	~~[[Category: Burley, S K.]]~~	+	[[Category: Tyagi, R]]
-	~~[[Category: Eswaramoorthy, S.]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Sauder, J M.]]~~	+
-	~~[[Category: Swaminathan, S.]]~~	+
-	[[Category: Tyagi, R~~.]]~~	+
-	~~[[Category: 11005r~~]]	+
	[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]		[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]
-	[[Category: New york sgx research center for structural genomic]]
-	[[Category: Nysgxrc]]
-	[[Category: Oxidoreductase]]
-	[[Category: Protein structure initiative ii]]
-	[[Category: Psi-2]]
-	[[Category: Structural genomic]]

OCA at 19:26, 30 September 2014

OCA — Tue, 30 Sep 2014 19:26:28 GMT

←Older revision		Revision as of 19:26, 30 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2rk9\| PDB=2rk9 \| SCENE= }}~~	+	==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01==
-	===The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01===	+	<StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution\|resolution]] 1.60Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RK9 FirstGlance]. <br>
-	[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA].	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 Vibrio splendidus 12B01])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Crystal structure of protein from Staphylococcus aureus\|Crystal structure of protein from Staphylococcus aureus]]		*[[Crystal structure of protein from Staphylococcus aureus\|Crystal structure of protein from Staphylococcus aureus]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Vibrio splendidus 12b01]]		[[Category: Vibrio splendidus 12b01]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA at 10:27, 11 March 2013

OCA — Mon, 11 Mar 2013 10:27:13 GMT

←Older revision		Revision as of 10:27, 11 March 2013
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-	[[Image:2rk9.png\|left\|200px]]
-
	{{STRUCTURE_2rk9\| PDB=2rk9 \| SCENE= }}		{{STRUCTURE_2rk9\| PDB=2rk9 \| SCENE= }}
-
	===The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01===		===The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01===
-

	==About this Structure==		==About this Structure==

OCA: Protected "2rk9" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 22:11:06 GMT

Protected "2rk9" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:11, 7 January 2013

OCA at 22:11, 7 January 2013

OCA — Mon, 07 Jan 2013 22:11:02 GMT

←Older revision		Revision as of 22:11, 7 January 2013
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	[[Image:2rk9.png\|left\|200px]]		[[Image:2rk9.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2RK9~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA].	+	[[2rk9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_splendidus_12b01 Vibrio splendidus 12b01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA].
		+
		+	==See Also==
		+	*[[Crystal structure of protein from Staphylococcus aureus\|Crystal structure of protein from Staphylococcus aureus]]
	[[Category: Vibrio splendidus 12b01]]		[[Category: Vibrio splendidus 12b01]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Eswaramoorthy, S.]]		[[Category: Eswaramoorthy, S.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Sauder, J M.]]		[[Category: Sauder, J M.]]
	[[Category: Swaminathan, S.]]		[[Category: Swaminathan, S.]]
Line 24:		Line 20:
	[[Category: 11005r]]		[[Category: 11005r]]
	[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]		[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
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	[[Category: Psi-2]]		[[Category: Psi-2]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:17:24 2008''