2rvo - Revision history

OCA at 20:54, 12 April 2023

OCA — Wed, 12 Apr 2023 20:54:15 GMT

←Older revision		Revision as of 20:54, 12 April 2023
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	==Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish==		==Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish==
-	<StructureSection load='2rvo' size='340' side='right'caption='[[2rvo~~]], [[NMR_Ensembles_of_Models \| 11 NMR models~~]]' scene=''>	+	<StructureSection load='2rvo' size='340' side='right'caption='[[2rvo]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Danio_rerio Danio rerio]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVO FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [https://pdbe.org/2rvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [https://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [https://pdbe.org/2rvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [https://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>
	</table>		</table>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Danio rerio]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Arai, N]]	+	[[Category: Arai N]]
-	[[Category: Kajikawa, M]]	+	[[Category: Kajikawa M]]
-	[[Category: Kawai, G]]	+	[[Category: Kawai G]]
-	[[Category: Norose, N]]	+	[[Category: Norose N]]
-	[[Category: Okada, N]]	+	[[Category: Okada N]]
-	[[Category: Otsu, M]]	+	[[Category: Otsu M]]
-	[[Category: Terao, R]]	+	[[Category: Terao R]]
-	~~[[Category: Line]]~~	+
-	~~[[Category: Retrotransposon]]~~	+
-	~~[[Category: Rna~~]]	+

OCA at 10:37, 7 July 2021

OCA — Wed, 07 Jul 2021 10:37:45 GMT

←Older revision		Revision as of 10:37, 7 July 2021
Line 3:		Line 3:
	<StructureSection load='2rvo' size='340' side='right'caption='[[2rvo]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='2rvo' size='340' side='right'caption='[[2rvo]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2RVO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RVO FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [~~http~~://pdbe.org/2rvo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [https://pdbe.org/2rvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [https://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:42, 21 August 2019

OCA — Wed, 21 Aug 2019 07:42:14 GMT

←Older revision		Revision as of 07:42, 21 August 2019
Line 1:		Line 1:

	==Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish==		==Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish==
-	<StructureSection load='2rvo' size='340' side='right' caption='[[2rvo]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>	+	<StructureSection load='2rvo' size='340' side='right'caption='[[2rvo]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RVO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RVO FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Arai, N]]		[[Category: Arai, N]]
	[[Category: Kajikawa, M]]		[[Category: Kajikawa, M]]

OCA at 07:45, 15 November 2017

OCA — Wed, 15 Nov 2017 07:45:24 GMT

←Older revision		Revision as of 07:45, 15 November 2017
Line 6:		Line 6:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [http://pdbe.org/2rvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [http://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [http://pdbe.org/2rvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [http://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Long interspersed nuclear element (LINE) is known to be transposed by reverse transcription using its RNA transcript. Recognition of the 3' stem-loop of LINE RNA by its reverse transcriptase (RT) is an important step of the retrotransposition. Our previous study revealed that the second G residue (G8) in the GGAUA loop of a 17mer LINE RNA from eel, UnaL2-17, is recognized by its RT and the U residue (U10) in the same loop is required to maintain the loop structure (Baba S, Kajikawa M, Okada N, Kawai G. Solution structure of an RNA stem-loop derived from the 3' conserved region of eel LINE UnaL2. RNA 2004;10:1380-1387). ZfL2-2, a LINE from zebrafish, has the same 3' stem-loop with UnaL2 and ZfL2-1 has similar but distinct 3' stem-loop with an insertion which can form an additional stem-loop. Here, we determined the solution structure of the 34mer RT recognition site of the LINE RNA (ZfL2-1-34). It was found that ZfL2-1-34 forms a hairpin with an internal loop, the tertiary structure of which is superimposed with that of ZfL2-2. It is noted that A10 and the inserted stem-loop, starting with A12, in ZfL2-1-34 located at the positions corresponding to those of G8 and U10, respectively, in UnaL2-17. These results strongly suggest that the two LINEs share the similar recognition mechanism and the A10 in ZfL2-1-34 is the determinant recognized by its RT.
		+
		+	Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.,Otsu M, Kajikawa M, Okada N, Kawai G J Biochem. 2017 Oct 1;162(4):279-285. doi: 10.1093/jb/mvx026. PMID:28431120<ref>PMID:28431120</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 2rvo" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 09:20, 10 March 2017

OCA — Fri, 10 Mar 2017 09:20:28 GMT

←Older revision		Revision as of 09:20, 10 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 2rvo is ON HOLD until Paper Publication~~	+	==Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish==
-		+	<StructureSection load='2rvo' size='340' side='right' caption='[[2rvo]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
-	~~Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2rvo]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2RVO FirstGlance]. <br>
-	~~Description:~~ Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rvo OCA], [http://pdbe.org/2rvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2rvo RCSB], [http://www.ebi.ac.uk/pdbsum/2rvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2rvo ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Okada~~, N]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Arai, N]]
	[[Category: Kajikawa, M]]		[[Category: Kajikawa, M]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]
-	[[Category: Terao, R]]
-	[[Category: Arai, N]]
	[[Category: Norose, N]]		[[Category: Norose, N]]
		+	[[Category: Okada, N]]
	[[Category: Otsu, M]]		[[Category: Otsu, M]]
		+	[[Category: Terao, R]]
		+	[[Category: Line]]
		+	[[Category: Retrotransposon]]
		+	[[Category: Rna]]

OCA at 11:23, 1 February 2017

OCA — Wed, 01 Feb 2017 11:23:23 GMT

←Older revision		Revision as of 11:23, 1 February 2017
Line 7:		Line 7:
	Description: Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish		Description: Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Okada, N]]
		+	[[Category: Kajikawa, M]]
	[[Category: Kawai, G]]		[[Category: Kawai, G]]
		+	[[Category: Terao, R]]
	[[Category: Arai, N]]		[[Category: Arai, N]]
	[[Category: Norose, N]]		[[Category: Norose, N]]
	[[Category: Otsu, M]]		[[Category: Otsu, M]]
-	[[Category: Okada, N]]
-	[[Category: Kajikawa, M]]
-	[[Category: Terao, R]]

OCA at 20:09, 10 May 2016

OCA — Tue, 10 May 2016 20:09:42 GMT

←Older revision		Revision as of 20:09, 10 May 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 2rvo is ON HOLD	+	The entry 2rvo is ON HOLD until Paper Publication

	Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.		Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.

OCA: Protected "2rvo" [edit=sysop:move=sysop]

OCA — Wed, 10 Feb 2016 09:49:26 GMT

Protected "2rvo" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:49, 10 February 2016

OCA: New page: '''Unreleased structure''' The entry 2rvo is ON HOLD Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G. Description: Solution structure of a reverse...

OCA — Wed, 10 Feb 2016 09:49:24 GMT

New page: '''Unreleased structure''' The entry 2rvo is ON HOLD Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G. Description: Solution structure of a reverse...

New page

'''Unreleased structure'''

The entry 2rvo is ON HOLD

Authors: Otsu, M., Norose, N., Arai, N., Terao, R., Kajikawa, M., Okada, N., Kawai, G.

Description: Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
[[Category: Unreleased Structures]]
[[Category: Kawai, G]]
[[Category: Arai, N]]
[[Category: Norose, N]]
[[Category: Otsu, M]]
[[Category: Okada, N]]
[[Category: Kajikawa, M]]
[[Category: Terao, R]]