2uul - Revision history

OCA at 14:55, 13 December 2023

OCA — Wed, 13 Dec 2023 14:55:06 GMT

←Older revision		Revision as of 14:55, 13 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UUL FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UUL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>~~, ~~<scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1gh0\|1gh0]]~~, ~~[[2uum\|2uum]], [[2uun\|2uun]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [https://pdbe.org/2uul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [https://www.ebi.ac.uk/pdbsum/2uul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [https://pdbe.org/2uul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [https://www.ebi.ac.uk/pdbsum/2uul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>
	</table>		</table>
Line 18:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uul ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uul ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	C-phycocyanins from three cyanobacterial cultures of freshwater and marine habitat, Spirulina, Phormidium and Lyngbya spp., were purified to homogeneity and crystallized using the hanging-drop vapour-diffusion method. Blue-coloured crystals in different crystal forms, monoclinic and hexagonal, were obtained for the three species. The crystals took 1-12 weeks to grow to full size using polyethylene glycols of different molecular weights as precipitants. The amino-acid sequences of these proteins show high similarity to other known C-phycocyanins from related organisms; however, the C-phycocyanins reported here showed different biochemical and biophysical properties, i.e. molecular weight, stability etc. The X-ray diffraction data were collected at resolutions of 3.0 A for the monoclinic and 3.2 and 3.6 A for the hexagonal forms. The unit-cell parameters corresponding to the monoclinic space group P2(1) are a = 107.33, b = 115.64, c = 183.26 A, beta = 90.03 degrees for Spirulina sp. C-phycocyanin and are similar for crystals of Phormidium and Lyngbya spp. C-phycocyanins. Crystals belonging to the hexagonal space group P6(3), with unit-cell parameters a = b = 154.97, c = 40.35 A and a = b = 151.96, c = 39.06 A, were also obtained for the C-phycocyanins from Spirulina and Lyngbya spp., respectively. The estimated solvent content is around 50% for the monoclinic crystals of all three species assuming the presence of two hexamers per asymmetric unit. The solvent content is 66.5 and 64.1% for the hexagonal crystals of C-phycocyanin from Spirulina and Lyngbya spp. assuming the presence of one alphabeta monomer per asymmetric unit.
-
-	X-ray crystallographic studies on C-phycocyanins from cyanobacteria from different habitats: marine and freshwater.,Satyanarayana L, Suresh CG, Patel A, Mishra S, Ghosh PK Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Sep 1;61(Pt, 9):844-7. Epub 2005 Aug 31. PMID:16511175<ref>PMID:16511175</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2uul" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Phycocyanin\|Phycocyanin]]		*[[Phycocyanin\|Phycocyanin]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Phormidium sp]]		[[Category: Phormidium sp]]
-	[[Category: Ghosh, P K]]	+	[[Category: K Ghosh P]]
-	[[Category: Mishra, S]]	+	[[Category: Mishra S]]
-	[[Category: Patel, A]]	+	[[Category: Patel A]]
-	[[Category: Satyanarayana, L]]	+	[[Category: Satyanarayana L]]
-	[[Category: Suresh~~, C G]]~~	+	[[Category: Suresh CG]]
-	~~[[Category: Bile pigment]]~~	+
-	~~[[Category: C-phycocyanin]]~~	+
-	~~[[Category: Chromophore]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Fresh water]]~~	+
-	~~[[Category: Lyngbya]]~~	+
-	~~[[Category: Marine]]~~	+
-	~~[[Category: Methylation]]~~	+
-	~~[[Category: Phormidium]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Phycobilisome]]~~	+
-	~~[[Category: Spirulina]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 12:29, 23 March 2022

OCA — Wed, 23 Mar 2022 12:29:41 GMT

←Older revision		Revision as of 12:29, 23 March 2022
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	<StructureSection load='2uul' size='340' side='right'caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='2uul' size='340' side='right'caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2UUL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [https://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UUL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [~~http~~://pdbe.org/2uul PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2uul PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [https://pdbe.org/2uul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [https://www.ebi.ac.uk/pdbsum/2uul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:09, 17 June 2020

OCA — Wed, 17 Jun 2020 11:09:47 GMT

←Older revision		Revision as of 11:09, 17 June 2020
Line 1:		Line 1:

	==Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.==		==Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.==
-	<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>	+	<StructureSection load='2uul' size='340' side='right'caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2UUL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2UUL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://pdbe.org/2uul PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://pdbe.org/2uul PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Phormidium sp]]		[[Category: Phormidium sp]]
	[[Category: Ghosh, P K]]		[[Category: Ghosh, P K]]

OCA at 08:49, 12 September 2018

OCA — Wed, 12 Sep 2018 08:49:10 GMT

←Older revision		Revision as of 08:49, 12 September 2018
Line 1:		Line 1:

-	==~~CRYSTAL STRUCTURE OF~~ C-~~PHYCOCYANIN FROM PHORMIDIUM~~, ~~LYNGBYA SPP~~. (~~MARINE~~) ~~AND SPIRULINA SP~~. (~~FRESH WATER~~) ~~SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS~~.==	+	==Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.==
	<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uu/2uul_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uu/2uul_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 2uul" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2uul" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Phycocyanin\|Phycocyanin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:11, 11 August 2016

OCA — Thu, 11 Aug 2016 21:11:34 GMT

←Older revision		Revision as of 21:11, 11 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.==		==CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.==
	<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>		<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://pdbe.org/2uul PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uul ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uul ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 25:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2uul" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:27, 19 January 2015

OCA — Mon, 19 Jan 2015 18:27:34 GMT

←Older revision		Revision as of 18:27, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UUL FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UUL FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Phormidium sp.]]	+	[[Category: Phormidium sp]]
-	[[Category: Ghosh, P K.]]	+	[[Category: Ghosh, P K]]
-	[[Category: Mishra, S.]]	+	[[Category: Mishra, S]]
-	[[Category: Patel, A.]]	+	[[Category: Patel, A]]
-	[[Category: Satyanarayana, L.]]	+	[[Category: Satyanarayana, L]]
-	[[Category: Suresh, C G.]]	+	[[Category: Suresh, C G]]
	[[Category: Bile pigment]]		[[Category: Bile pigment]]
	[[Category: C-phycocyanin]]		[[Category: C-phycocyanin]]

OCA at 02:13, 1 October 2014

OCA — Wed, 01 Oct 2014 02:13:17 GMT

←Older revision		Revision as of 02:13, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2uul.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.==
		+	<StructureSection load='2uul' size='340' side='right' caption='[[2uul]], [[Resolution\|resolution]] 3.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UUL FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BLA:BILIVERDINE+IX+ALPHA'>BLA</scene>, <scene name='pdbligand=CYC:PHYCOCYANOBILIN'>CYC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gh0\|1gh0]], [[2uum\|2uum]], [[2uun\|2uun]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uul OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uul RCSB], [http://www.ebi.ac.uk/pdbsum/2uul PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uu/2uul_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	C-phycocyanins from three cyanobacterial cultures of freshwater and marine habitat, Spirulina, Phormidium and Lyngbya spp., were purified to homogeneity and crystallized using the hanging-drop vapour-diffusion method. Blue-coloured crystals in different crystal forms, monoclinic and hexagonal, were obtained for the three species. The crystals took 1-12 weeks to grow to full size using polyethylene glycols of different molecular weights as precipitants. The amino-acid sequences of these proteins show high similarity to other known C-phycocyanins from related organisms; however, the C-phycocyanins reported here showed different biochemical and biophysical properties, i.e. molecular weight, stability etc. The X-ray diffraction data were collected at resolutions of 3.0 A for the monoclinic and 3.2 and 3.6 A for the hexagonal forms. The unit-cell parameters corresponding to the monoclinic space group P2(1) are a = 107.33, b = 115.64, c = 183.26 A, beta = 90.03 degrees for Spirulina sp. C-phycocyanin and are similar for crystals of Phormidium and Lyngbya spp. C-phycocyanins. Crystals belonging to the hexagonal space group P6(3), with unit-cell parameters a = b = 154.97, c = 40.35 A and a = b = 151.96, c = 39.06 A, were also obtained for the C-phycocyanins from Spirulina and Lyngbya spp., respectively. The estimated solvent content is around 50% for the monoclinic crystals of all three species assuming the presence of two hexamers per asymmetric unit. The solvent content is 66.5 and 64.1% for the hexagonal crystals of C-phycocyanin from Spirulina and Lyngbya spp. assuming the presence of one alphabeta monomer per asymmetric unit.

-	~~{{STRUCTURE_2uul\| PDB=2uul \| SCENE= }}~~	+	X-ray crystallographic studies on C-phycocyanins from cyanobacteria from different habitats: marine and freshwater.,Satyanarayana L, Suresh CG, Patel A, Mishra S, Ghosh PK Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Sep 1;61(Pt, 9):844-7. Epub 2005 Aug 31. PMID:16511175<ref>PMID:16511175</ref>

-	~~===CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM~~, ~~LYNGBYA SPP~~. ~~(MARINE) AND SPIRULINA SP~~. ~~(FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS~~.~~===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16511175}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2uul]] is a 24 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016511175<~~/~~ref~~><~~ref group="xtra">PMID:015766866</ref><references group="xtra"~~/>	+
	[[Category: Phormidium sp.]]		[[Category: Phormidium sp.]]
	[[Category: Ghosh, P K.]]		[[Category: Ghosh, P K.]]

OCA at 13:09, 30 January 2013

OCA — Wed, 30 Jan 2013 13:09:10 GMT

←Older revision		Revision as of 13:09, 30 January 2013
Line 1:		Line 1:
	[[Image:2uul.png\|left\|200px]]		[[Image:2uul.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2uul", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2uul\| PDB=2uul \| SCENE= }}		{{STRUCTURE_2uul\| PDB=2uul \| SCENE= }}

	===CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.===		===CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16511175}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16511175 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16511175}}		{{ABSTRACT_PUBMED_16511175}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16511175~~</ref><ref group="xtra">PMID:~~15766866~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016511175</ref><ref group="xtra">PMID:015766866</ref><references group="xtra"/>
	[[Category: Phormidium sp.]]		[[Category: Phormidium sp.]]
	[[Category: Ghosh, P K.]]		[[Category: Ghosh, P K.]]

OCA: Protected "2uul" [edit=sysop:move=sysop]

OCA — Tue, 15 Mar 2011 00:19:07 GMT

Protected "2uul" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:19, 15 March 2011

OCA at 00:19, 15 March 2011

OCA — Tue, 15 Mar 2011 00:19:06 GMT

←Older revision		Revision as of 00:19, 15 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2uul.png\|left\|200px]]		[[Image:2uul.png\|left\|200px]]

Line 12:		Line 11:
	===CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.===		===CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM PHORMIDIUM, LYNGBYA SPP. (MARINE) AND SPIRULINA SP. (FRESH WATER) SHOWS TWO DIFFERENT WAYS OF ENERGY TRANSFER BETWEEN TWO HEXAMERS.===

		+
		+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_16511175}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 16511175 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_16511175}}

	==About this Structure==		==About this Structure==
-	~~2UUL~~ is a 24 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA].	+	[[2uul]] is a 24 chain structure with sequence from [http://en.wikipedia.org/wiki/Phormidium_sp. Phormidium sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UUL OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:16511175</ref><references group="xtra"/>	+	<ref group="xtra">PMID:16511175</ref><ref group="xtra">PMID:15766866</ref><references group="xtra"/>
	[[Category: Phormidium sp.]]		[[Category: Phormidium sp.]]
	[[Category: Ghosh, P K.]]		[[Category: Ghosh, P K.]]
Line 37:		Line 42:
	[[Category: Spirulina]]		[[Category: Spirulina]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:38:24 2009''