2uwc - Revision history

OCA at 14:55, 13 December 2023

OCA — Wed, 13 Dec 2023 14:55:50 GMT

←Older revision		Revision as of 14:55, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2uwc' size='340' side='right'caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2uwc' size='340' side='right'caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Common_nasturtium Common nasturtium~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UWC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~2uwb~~\|~~2uwb~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [https://pdbe.org/2uwc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [https://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [https://pdbe.org/2uwc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [https://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/Q07524_TROMA Q07524_TROMA]] Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.[RuleBase:RU361120]	+	[https://www.uniprot.org/uniprot/Q07524_TROMA Q07524_TROMA] Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.[RuleBase:RU361120]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Common nasturtium]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Baumann, M J]]
-	[[Category: Brumer, H]]
-	[[Category: Czjzek, M]]
-	[[Category: Eklof, J M]]
-	[[Category: Kallas, A]]
-	[[Category: Michel, G]]
-	[[Category: Teeri, T T]]
-	[[Category: Family gh16]]
-	[[Category: Glycosidase]]
-	[[Category: Hydrolase]]
-	[[Category: Isoform nxg2]]
	[[Category: Tropaeolum majus]]		[[Category: Tropaeolum majus]]
-	[[Category: ~~Xyloglucan hydrolase~~]]	+	[[Category: Baumann MJ]]
-	[[Category: ~~Xyloglucan-endo-transferase~~]]	+	[[Category: Brumer H]]
		+	[[Category: Czjzek M]]
		+	[[Category: Eklof JM]]
		+	[[Category: Kallas A]]
		+	[[Category: Michel G]]
		+	[[Category: Teeri TT]]

OCA at 12:31, 23 March 2022

OCA — Wed, 23 Mar 2022 12:31:58 GMT

←Older revision		Revision as of 12:31, 23 March 2022
Line 3:		Line 3:
	<StructureSection load='2uwc' size='340' side='right'caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2uwc' size='340' side='right'caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Common_nasturtium Common nasturtium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2UWC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Common_nasturtium Common nasturtium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2uwb\|2uwb]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [~~http~~://pdbe.org/2uwc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [https://pdbe.org/2uwc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [https://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/Q07524_TROMA Q07524_TROMA]] Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.[RuleBase:RU361120]	+	[[https://www.uniprot.org/uniprot/Q07524_TROMA Q07524_TROMA]] Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.[RuleBase:RU361120]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:12, 17 June 2020

OCA — Wed, 17 Jun 2020 11:12:19 GMT

←Older revision		Revision as of 11:12, 17 June 2020
Line 1:		Line 1:

	==Crystal structure of Nasturtium xyloglucan hydrolase isoform NXG2==		==Crystal structure of Nasturtium xyloglucan hydrolase isoform NXG2==
-	<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='2uwc' size='340' side='right'caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_nasturtium Common nasturtium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2UWC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_nasturtium Common nasturtium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://pdbe.org/2uwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://pdbe.org/2uwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Common nasturtium]]		[[Category: Common nasturtium]]
		+	[[Category: Large Structures]]
	[[Category: Baumann, M J]]		[[Category: Baumann, M J]]
	[[Category: Brumer, H]]		[[Category: Brumer, H]]

OCA at 09:03, 12 September 2018

OCA — Wed, 12 Sep 2018 09:03:06 GMT

←Older revision		Revision as of 09:03, 12 September 2018
Line 1:		Line 1:

-	==~~CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM~~ NXG2==	+	==Crystal structure of Nasturtium xyloglucan hydrolase isoform NXG2==
	<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uw/2uwc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uw/2uwc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:25, 11 August 2016

OCA — Thu, 11 Aug 2016 21:25:34 GMT

←Older revision		Revision as of 21:25, 11 August 2016
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2==		==CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2==
	<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Tropaeolum_majus Tropaeolum majus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UWC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Common_nasturtium Common nasturtium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://pdbe.org/2uwc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2uwc ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q07524_TROMA Q07524_TROMA]] Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.[RuleBase:RU361120]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 14:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2uwc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 24:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2uwc" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Tropaeolum majus~~]]	+	[[Category: Common nasturtium]]
	[[Category: Baumann, M J]]		[[Category: Baumann, M J]]
	[[Category: Brumer, H]]		[[Category: Brumer, H]]
Line 40:		Line 44:
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Isoform nxg2]]		[[Category: Isoform nxg2]]
		+	[[Category: Tropaeolum majus]]
	[[Category: Xyloglucan hydrolase]]		[[Category: Xyloglucan hydrolase]]
	[[Category: Xyloglucan-endo-transferase]]		[[Category: Xyloglucan-endo-transferase]]

OCA at 18:43, 19 January 2015

OCA — Mon, 19 Jan 2015 18:43:08 GMT

←Older revision		Revision as of 18:43, 19 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UWC FirstGlance]. <br>		<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Tropaeolum majus]]		[[Category: Tropaeolum majus]]
-	[[Category: Baumann, M J.]]	+	[[Category: Baumann, M J]]
-	[[Category: Brumer, H.]]	+	[[Category: Brumer, H]]
-	[[Category: Czjzek, M.]]	+	[[Category: Czjzek, M]]
-	[[Category: Eklof, J M.]]	+	[[Category: Eklof, J M]]
-	[[Category: Kallas, A.]]	+	[[Category: Kallas, A]]
-	[[Category: Michel, G.]]	+	[[Category: Michel, G]]
-	[[Category: Teeri, T T.]]	+	[[Category: Teeri, T T]]
	[[Category: Family gh16]]		[[Category: Family gh16]]
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Isoform nxg2]]		[[Category: Isoform nxg2]]
-	[[Category: Tropaeolum majus]]
	[[Category: Xyloglucan hydrolase]]		[[Category: Xyloglucan hydrolase]]
	[[Category: Xyloglucan-endo-transferase]]		[[Category: Xyloglucan-endo-transferase]]

OCA at 02:22, 1 October 2014

OCA — Wed, 01 Oct 2014 02:22:04 GMT

←Older revision		Revision as of 02:22, 1 October 2014
Line 1:		Line 1:
-	[[~~Image:~~2uwc.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2==
		+	<StructureSection load='2uwc' size='340' side='right' caption='[[2uwc]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2UWC FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2uwb\|2uwb]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2uwc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2uwc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2uwc RCSB], [http://www.ebi.ac.uk/pdbsum/2uwc PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/uw/2uwc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	High-resolution, three-dimensional structures of the archetypal glycoside hydrolase family 16 (GH16) endo-xyloglucanases Tm-NXG1 and Tm-NXG2 from nasturtium (Tropaeolum majus) have been solved by x-ray crystallography. Key structural features that modulate the relative rates of substrate hydrolysis to transglycosylation in the GH16 xyloglucan-active enzymes were identified by structure-function studies of the recombinantly expressed enzymes in comparison with data for the strict xyloglucan endo-transglycosylase Ptt-XET16-34 from hybrid aspen (Populus tremula x Populus tremuloides). Production of the loop deletion variant Tm-NXG1-DeltaYNIIG yielded an enzyme that was structurally similar to Ptt-XET16-34 and had a greatly increased transglycosylation:hydrolysis ratio. Comprehensive bioinformatic analyses of XTH gene products, together with detailed kinetic data, strongly suggest that xyloglucanase activity has evolved as a gain of function in an ancestral GH16 XET to meet specific biological requirements during seed germination, fruit ripening, and rapid wall expansion.

-	~~{{STRUCTURE_2uwc\| PDB=2uwc \| SCENE= }}~~	+	Structural evidence for the evolution of xyloglucanase activity from xyloglucan endo-transglycosylases: biological implications for cell wall metabolism.,Baumann MJ, Eklof JM, Michel G, Kallas AM, Teeri TT, Czjzek M, Brumer H 3rd Plant Cell. 2007 Jun;19(6):1947-63. Epub 2007 Jun 8. PMID:17557806<ref>PMID:17557806</ref>

-	~~===CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17557806}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2uwc]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Tropaeolum_majus Tropaeolum majus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017557806<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Tropaeolum majus]]		[[Category: Tropaeolum majus]]
	[[Category: Baumann, M J.]]		[[Category: Baumann, M J.]]

OCA: Protected "2uwc" [edit=sysop:move=sysop]

OCA — Mon, 07 Jan 2013 23:19:14 GMT

Protected "2uwc" [edit=sysop:move=sysop]

←Older revision

Revision as of 23:19, 7 January 2013

OCA at 23:19, 7 January 2013

OCA — Mon, 07 Jan 2013 23:19:11 GMT

←Older revision		Revision as of 23:19, 7 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2uwc.png\|left\|200px]]		[[Image:2uwc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2uwc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2uwc\| PDB=2uwc \| SCENE= }}		{{STRUCTURE_2uwc\| PDB=2uwc \| SCENE= }}

	===CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2===		===CRYSTAL STRUCTURE OF NASTURTIUM XYLOGLUCAN HYDROLASE ISOFORM NXG2===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17557806}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17557806 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17557806}}		{{ABSTRACT_PUBMED_17557806}}

	==About this Structure==		==About this Structure==
-	~~2UWC~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA].	+	[[2uwc]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17557806~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017557806</ref><references group="xtra"/>
	[[Category: Tropaeolum majus]]		[[Category: Tropaeolum majus]]
	[[Category: Baumann, M J.]]		[[Category: Baumann, M J.]]
	[[Category: Brumer, H.]]		[[Category: Brumer, H.]]
	[[Category: Czjzek, M.]]		[[Category: Czjzek, M.]]
-	[[Category: Eklof, J.]]	+	[[Category: Eklof, J M.]]
	[[Category: Kallas, A.]]		[[Category: Kallas, A.]]
	[[Category: Michel, G.]]		[[Category: Michel, G.]]
Line 39:		Line 27:
	[[Category: Xyloglucan hydrolase]]		[[Category: Xyloglucan hydrolase]]
	[[Category: Xyloglucan-endo-transferase]]		[[Category: Xyloglucan-endo-transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:48:00 2009''

OCA at 17:48, 17 February 2009

OCA — Tue, 17 Feb 2009 17:48:02 GMT

←Older revision		Revision as of 17:48, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2UWC is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA].	+	2UWC is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Tropaeolum_majus Tropaeolum majus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2UWC OCA].

	==Reference==		==Reference==
-	Structural evidence for the evolution of xyloglucanase activity from xyloglucan endo-transglycosylases: biological implications for cell wall metabolism., Baumann MJ, Eklof JM, Michel G, Kallas AM, Teeri TT, Czjzek M, Brumer H 3rd, Plant Cell. 2007 Jun;19(6):1947-63. Epub 2007 Jun 8. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/17557806 17557806]~~	+	<ref group="xtra">PMID:17557806</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Tropaeolum majus]]		[[Category: Tropaeolum majus]]
	[[Category: Baumann, M J.]]		[[Category: Baumann, M J.]]
Line 41:		Line 40:
	[[Category: Xyloglucan-endo-transferase]]		[[Category: Xyloglucan-endo-transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 03~~:42:~~18 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 19:48:00 2009''